Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC117598747 |
| gene name | NA |
| gene type | coding |
| species | striped catfish (Pangasianodon hypophthalmus) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_047607.1 |
| NCBI id | CM018553.1 |
| chromosome length | 26458119 |
| location | 21645852 ~ 21646623 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| id | name | namespace |
|---|---|---|
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds | molecular_function |
| GO:0016798 | hydrolase activity, acting on glycosyl bonds | molecular_function |
| GO:0061783 | peptidoglycan muralytic activity | molecular_function |
| GO:0003796 | lysozyme activity | molecular_function |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| LOC117598747 | True | 683 | V_segment | 0.42 | 2 | 21645852 | 21646623 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| rest | rest | coding | upstream | 13946 | 21620631 ~ 21631906 (+) |
| LOC113540583 | NA | coding | upstream | 99760 | 21541990 ~ 21546092 (+) |
| LOC117598820 | LOC108280985,LOC108277545 | coding | upstream | 165410 | 21454118 ~ 21480442 (+) |
| LOC117598821 | NA | coding | upstream | 215394 | 21405340 ~ 21430458 (+) |
| LOC113527856 | NA | coding | upstream | 243128 | 21390903 ~ 21402724 (+) |
| LOC117598748 | NA | coding | downstream | 613 | 21647236 ~ 21647803 (+) |
| LOC117598992 | NA | coding | downstream | 11879 | 21658502 ~ 21659107 (+) |
| LOC117599000 | NA | coding | downstream | 13802 | 21660425 ~ 21661039 (+) |
| LOC117598848 | NA | coding | downstream | 16472 | 21663095 ~ 21663540 (+) |
| LOC117598774 | NA | coding | downstream | 17971 | 21664594 ~ 21665744 (+) |
| G214829 | NA | non-coding | upstream | 10778 | 21634851 ~ 21635074 (+) |
| G214825 | NA | non-coding | upstream | 28558 | 21617095 ~ 21617294 (+) |
| G214747 | LOC108280967 | non-coding | upstream | 89451 | 21551549 ~ 21556401 (+) |
| LOC117598827 | LOC108280967,LOC108277545,LOC108277574 | non-coding | upstream | 140066 | 21502137 ~ 21505786 (+) |
| G214807 | NA | non-coding | upstream | 170889 | 21474633 ~ 21474963 (+) |
| G215042 | NA | non-coding | downstream | 9638 | 21656261 ~ 21656835 (+) |
| G215055 | NA | non-coding | downstream | 71069 | 21717692 ~ 21718076 (+) |
| G215059 | NA | non-coding | downstream | 77988 | 21724611 ~ 22137078 (+) |
| G215064 | NA | non-coding | downstream | 127600 | 21774223 ~ 21807343 (+) |
| LOC117598973 | NA | non-coding | downstream | 241408 | 21888031 ~ 21888800 (+) |
| LOC113540569 | LOC108280981,LOC108280985,LOC108277545,LOC108277574,LOC108280967 | other | upstream | 80476 | 21514573 ~ 21565376 (+) |
| LOC113540568 | LOC108280981,LOC108280985,LOC108277574,LOC108277545,LOC108280967 | other | upstream | 132812 | 21482022 ~ 21513040 (+) |
| hopx | hopx | other | upstream | 296766 | 21340416 ~ 21349086 (+) |
| nudt6 | nudt6 | other | upstream | 621765 | 21011774 ~ 21024087 (+) |
| LOC113528520 | znf518b | other | upstream | 1472500 | 20022509 ~ 20173352 (+) |
| G215022 | NA | other | downstream | 16461 | 21663084 ~ 22000809 (+) |
| G215010 | LOC108275153 | other | downstream | 17935 | 21664558 ~ 21711769 (+) |
| G215008 | LOC108275153 | other | downstream | 64571 | 21711194 ~ 21721059 (+) |
| LOC117598918 | LOC108275153 | other | downstream | 64692 | 21711315 ~ 21711778 (+) |
| LOC117598875 | NA | other | downstream | 67306 | 21713929 ~ 21714624 (+) |
