Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC117598775 |
| gene name | NA |
| gene type | coding |
| species | striped catfish (Pangasianodon hypophthalmus) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_047607.1 |
| NCBI id | CM018553.1 |
| chromosome length | 26458119 |
| location | 21668341 ~ 21668882 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| LOC117598775 | True | 342 | V_segment | 0.47 | 3 | 21668341 | 21668882 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC117598774 | NA | coding | upstream | 2597 | 21664594 ~ 21665744 (+) |
| LOC117598848 | NA | coding | upstream | 4801 | 21663095 ~ 21663540 (+) |
| LOC117599000 | NA | coding | upstream | 7302 | 21660425 ~ 21661039 (+) |
| LOC117598992 | NA | coding | upstream | 9234 | 21658502 ~ 21659107 (+) |
| LOC117598748 | NA | coding | upstream | 20538 | 21647236 ~ 21647803 (+) |
| LOC113546929 | NA | coding | downstream | 868620 | 22537502 ~ 22548866 (+) |
| cckb | LOC108274239 | coding | downstream | 945977 | 22614859 ~ 22621980 (+) |
| rnf44 | rnf44 | coding | downstream | 1064853 | 22733735 ~ 22754432 (+) |
| pdlim7 | pdlim7 | coding | downstream | 1112484 | 22781366 ~ 22825233 (+) |
| LOC113546949 | LOC108277208 | coding | downstream | 1472832 | 23141714 ~ 23143760 (+) |
| G215042 | NA | non-coding | upstream | 11506 | 21656261 ~ 21656835 (+) |
| G214829 | NA | non-coding | upstream | 33267 | 21634851 ~ 21635074 (+) |
| G214825 | NA | non-coding | upstream | 51047 | 21617095 ~ 21617294 (+) |
| G214747 | LOC108280967 | non-coding | upstream | 111940 | 21551549 ~ 21556401 (+) |
| LOC117598827 | LOC108280967,LOC108277545,LOC108277574 | non-coding | upstream | 162555 | 21502137 ~ 21505786 (+) |
| G215055 | NA | non-coding | downstream | 48810 | 21717692 ~ 21718076 (+) |
| G215059 | NA | non-coding | downstream | 55729 | 21724611 ~ 22137078 (+) |
| G215064 | NA | non-coding | downstream | 105341 | 21774223 ~ 21807343 (+) |
| LOC117598973 | NA | non-coding | downstream | 219149 | 21888031 ~ 21888800 (+) |
| LOC117598789 | NA | non-coding | downstream | 222716 | 21891598 ~ 21892131 (+) |
| G215015 | LOC108275153 | other | upstream | 19189 | 21646080 ~ 21649152 (+) |
| LOC113540569 | LOC108280981,LOC108280985,LOC108277545,LOC108277574,LOC108280967 | other | upstream | 102965 | 21514573 ~ 21565376 (+) |
| LOC113540568 | LOC108280981,LOC108280985,LOC108277574,LOC108277545,LOC108280967 | other | upstream | 155301 | 21482022 ~ 21513040 (+) |
| hopx | hopx | other | upstream | 319255 | 21340416 ~ 21349086 (+) |
| nudt6 | nudt6 | other | upstream | 644254 | 21011774 ~ 21024087 (+) |
| G215008 | LOC108275153 | other | downstream | 42312 | 21711194 ~ 21721059 (+) |
| LOC117598918 | LOC108275153 | other | downstream | 42433 | 21711315 ~ 21711778 (+) |
| LOC117598875 | NA | other | downstream | 45047 | 21713929 ~ 21714624 (+) |
| LOC117598966 | NA | other | downstream | 51751 | 21720633 ~ 21721061 (+) |
| LOC117598855 | NA | other | downstream | 57580 | 21726462 ~ 21727321 (+) |
