LOC117598777


Basic Information

Item Value
gene id LOC117598777
gene name NA
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 21730403 ~ 21731069 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>LOC117598777
GCATGAAACACAGCTGGAGTCTTACAGTGAGCTTTTTCTCTTCATGGCTATTCCTCTGGGAATCGTTTTATGTCTCTAGTGGGCGTGCCATGCAAACCAAATCCTGTGTTTGAACCATTTATGCTGATATACATTCAGCTCAACAACATACCAgcagtttgtgttcatttacagcaacagtaatcattttaattctttgAGATGGGACTAGGCAGAGTTTTGAGTTACTTTGCTCTAACAACGTTCATTCAatATTCCTGCAGTCAGACATTGATTGAGTCTGATTCAGTCATCATCAAACCTGATCAGTCTCATAAACTGACCTGCACAGCATCTGGATTTAACTTTGGTAGCTACTGGATGGCTTGGATCAGACAGGCTCCTGGAAAAGGACTGGAATTTGTTGCAACTATTGAGTATGATAGTGCTAACAAGTATTACTCCAGCGCAGTTAAAGGCCGCTTCACTGTCTCCAGAGACAACAGTAAGCAGCAGGTGTATCTGCACATGAGCAGCGTGAGGacagaagacacagctgtgtattactgcgcccGTGACCCACAGTGA

Function

GO: NA

KEGG:

id description
ko05152 Tuberculosis

RNA

RNA id representative length rna type GC content exon number start site end site
LOC117598777 True 567 V_segment 0.43 2 21730403 21731069

Neighbor

gene id symbol gene type direction distance location
LOC117598775 NA coding upstream 61521 21668341 ~ 21668882 (+)
LOC117598774 NA coding upstream 64659 21664594 ~ 21665744 (+)
LOC117598848 NA coding upstream 66863 21663095 ~ 21663540 (+)
LOC117599000 NA coding upstream 69364 21660425 ~ 21661039 (+)
LOC117598992 NA coding upstream 71296 21658502 ~ 21659107 (+)
LOC113546929 NA coding downstream 806433 22537502 ~ 22548866 (+)
cckb LOC108274239 coding downstream 883790 22614859 ~ 22621980 (+)
rnf44 rnf44 coding downstream 1002666 22733735 ~ 22754432 (+)
pdlim7 pdlim7 coding downstream 1050297 22781366 ~ 22825233 (+)
LOC113546949 LOC108277208 coding downstream 1410645 23141714 ~ 23143760 (+)
G215055 NA non-coding upstream 12327 21717692 ~ 21718076 (+)
G215042 NA non-coding upstream 73568 21656261 ~ 21656835 (+)
G214829 NA non-coding upstream 95329 21634851 ~ 21635074 (+)
G214825 NA non-coding upstream 113109 21617095 ~ 21617294 (+)
G214747 LOC108280967 non-coding upstream 174002 21551549 ~ 21556401 (+)
G215064 NA non-coding downstream 43154 21774223 ~ 21807343 (+)
LOC117598973 NA non-coding downstream 156962 21888031 ~ 21888800 (+)
LOC117598789 NA non-coding downstream 160529 21891598 ~ 21892131 (+)
LOC117598900 NA non-coding downstream 162100 21893169 ~ 21894161 (+)
LOC117598962 NA non-coding downstream 167839 21898908 ~ 21899339 (+)
LOC117598855 NA other upstream 3082 21726462 ~ 21727321 (+)
LOC117598966 NA other upstream 9342 21720633 ~ 21721061 (+)
G215008 LOC108275153 other upstream 9344 21711194 ~ 21721059 (+)
LOC117598875 NA other upstream 15779 21713929 ~ 21714624 (+)
LOC117598918 LOC108275153 other upstream 18625 21711315 ~ 21711778 (+)
LOC117598939 NA other downstream 92600 21823669 ~ 21824112 (+)
LOC117598860 LOC108275153 other downstream 98478 21829547 ~ 21830139 (+)
LOC117598953 NA other downstream 100696 21831765 ~ 21839896 (+)
LOC117598853 NA other downstream 106394 21837463 ~ 21853760 (+)
LOC117598912 NA other downstream 113777 21844846 ~ 21845329 (+)

Expression


Co-expression Network