LOC117598794


Basic Information

Item Value
gene id LOC117598794
gene name NA
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 21794381 ~ 21938574 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>LOC117598794
gaggaggagagcagcTGAGCAGTTTAATTCACTTCAGTTAATTAACCAAACAACGATGTTCTcatcagtgctgctgctgctaacaGCTGCATTCTGTGGTGTTGGCGGTGTGGAGCTCACTCAGTCAGCCTCTGTGCTCGTGAAACCTGGAGAGTCCTTCTCCATCTCTTGTAAGGTCTCAGAGTCGAGTTATTGTATTCACTGGATACGACAACCTGCTGGGAAAGCACTGGAATGGCTCGGATATCTGTGTGATGGTGGTGGCACTAATCTCAAAGACACAATGAAGAGCAAGATCAGTTTCAGCCAGGACACATCCAGCAGCACAGTTTATTTAAGAGGACAAAACTTTCAGACTGAGGACAcggctgtgtattactgcgccaGAGACACAGCACTACAAACTCACTGCAGCCCTGTTGCTGAATCTGAGCTGTGTAAAGTGGATGTTGGTATCAGTGATAGAAGCTCCACACACTCAGCTcagtacaaaacacacatctgCAAGAACAGAAGcaaagtgtaa
>TU254953
ggtgaggaggaggagagcagcTGAGCAGTTTAATTCACTTCAGTTAATTAACCAAACAACGATGTTCTcatcagtgctgctgctgctaacaGCTGCATTCTGTGGTGTTGGCGGTGTGGAGCTCACTCAGTCAGCCTCTGTGCTCGTGAAACCTGGAGAGTCCTTCTCCATCTCTTGTAAGATCTCAGTTTCGAGTTATTGTATTAACTGGATACGACAACCTGCTGGGAAAGCACTGGAATGGCTCGGATATCTGTGTGATGGTGGTAGCACTAATCTAAAAGACACAATGAAGAGCAAGATCAGTTTCAGCCAGGACAAATCGAGCCGCACAGTTTATTTAAGAGGACAAAACTTTCAGACTGAGGACAcggctgtgtattactgcgccaGAGAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC117598794 True 526 V_segment 0.47 3 21937771 21938568
TU254953 False 397 TUCP 0.47 3 21794381 21938574

Neighbor

gene id symbol gene type direction distance location
LOC117598896 NA coding downstream 100747 21693183 ~ 21693634 (-)
LOC117598776 NA coding downstream 102805 21685697 ~ 21691576 (-)
LOC117598954 NA coding downstream 109736 21684024 ~ 21684645 (-)
LOC117598868 NA coding downstream 117574 21675638 ~ 21676807 (-)
LOC117598919 NA coding downstream 121051 21672822 ~ 21673330 (-)
topaz1 topaz1 coding upstream 614150 22552724 ~ 22582102 (-)
trak1b LOC108275079,LOC108414239,LOC107706145 coding upstream 691307 22629881 ~ 22644263 (-)
LOC113546927 ctnnb1,LOC108256545,LOC108414240,LOC103034575,LOC107710337,LOC107706261,LOC107688361,LOC107654753 coding upstream 722986 22661560 ~ 22676748 (-)
LOC113546904 LOC108258503 coding upstream 739590 22678164 ~ 22696823 (-)
cdhr2 NA coding upstream 767980 22706554 ~ 22729853 (-)
G215168 NA non-coding downstream 148487 21645119 ~ 21645894 (-)
G214980 NA non-coding downstream 159517 21634658 ~ 21634864 (-)
G214978 rest,LOC106604639 non-coding downstream 162514 21628129 ~ 21631867 (-)
G214977 NA non-coding downstream 172460 21620678 ~ 21621921 (-)
G214976 NA non-coding downstream 177549 21616602 ~ 21616832 (-)
G215217 NA non-coding upstream 83512 22022086 ~ 22078908 (-)
G215171 NA non-coding upstream 86909 22025483 ~ 22082843 (-)
G215221 NA non-coding upstream 141588 22080162 ~ 22136007 (-)
G215224 NA non-coding upstream 182882 22121456 ~ 22133365 (-)
G215172 NA non-coding upstream 187098 22125672 ~ 22140140 (-)
G215201 NA other downstream 2344 21791566 ~ 21792037 (-)
LOC117598865 NA other downstream 3788 21790028 ~ 21790593 (-)
LOC117598889 NA other downstream 6846 21786702 ~ 21787535 (-)
LOC117598785 NA other downstream 13008 21780930 ~ 21781373 (-)
LOC117598784 NA other downstream 14565 21779212 ~ 21779816 (-)
LOC113546938 NA other upstream 9157 21947731 ~ 21948350 (-)
LOC117595695 NA other upstream 13462 21952036 ~ 21952525 (-)
LOC117598870 NA other upstream 16726 21955300 ~ 21956128 (-)
LOC117595694 NA other upstream 18724 21957298 ~ 21957752 (-)
G215211 NA other upstream 18746 21957320 ~ 22217070 (-)

Expression


Co-expression Network