LOC117598796


Basic Information

Item Value
gene id LOC117598796
gene name NA
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 22003426 ~ 22003947 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>LOC117598796
CTGTGGGCTCTGGAGAATTTAGCACTGCTTTTAGTTAAACGATGTTCCTTCCATTTTTGCTGCTGCTGGCAGCTTCATCCTatgtggAATGTGCAGTAGAACTCACTCAGGTCACCTCAGTGATGTTAAAGCCAGGAGACTCTTTAACCCTCAGCTGTAAAGTATCCGGCTACTCTGTAACTGATAACAGCTACGCCACAGCTTGGATTCGACAACCTGCAGGGAAAACTCTGGAGTGGATAAACAACATTTGGGGTGGTGgaagtatttataataaagagTCTCTAAAAAGCAAGTTCAGTATTTCTAAAGACGGCTCCAGCAGCACGGTGACTCTGAGAGGACAGAATCTGCAGacagaagacacagctgtgtattactgcgcccgccacacacacactggtgctTCTACTTAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC117598796 True 416 V_segment 0.46 2 22003426 22003947

Neighbor

gene id symbol gene type direction distance location
LOC117598775 NA coding upstream 334544 21668341 ~ 21668882 (+)
LOC117598774 NA coding upstream 337682 21664594 ~ 21665744 (+)
LOC117598848 NA coding upstream 339886 21663095 ~ 21663540 (+)
LOC117599000 NA coding upstream 342387 21660425 ~ 21661039 (+)
LOC117598992 NA coding upstream 344319 21658502 ~ 21659107 (+)
LOC113546929 NA coding downstream 533555 22537502 ~ 22548866 (+)
cckb LOC108274239 coding downstream 610912 22614859 ~ 22621980 (+)
rnf44 rnf44 coding downstream 729788 22733735 ~ 22754432 (+)
pdlim7 pdlim7 coding downstream 777419 22781366 ~ 22825233 (+)
LOC113546949 LOC108277208 coding downstream 1137767 23141714 ~ 23143760 (+)
G215069 NA non-coding upstream 8361 21916419 ~ 21995065 (+)
G215075 NA non-coding upstream 37193 21923978 ~ 21966233 (+)
LOC117598970 NA non-coding upstream 90077 21912612 ~ 21913349 (+)
LOC117598790 NA non-coding upstream 91607 21911288 ~ 21911819 (+)
LOC117598935 NA non-coding upstream 93330 21909653 ~ 21910096 (+)
G215035 NA non-coding downstream 11871 22015818 ~ 22020735 (+)
G215093 NA non-coding downstream 54397 22058344 ~ 22059756 (+)
G215095 NA non-coding downstream 73543 22077490 ~ 22133009 (+)
G215107 NA non-coding downstream 129255 22133202 ~ 22401320 (+)
LOC117598974 NA non-coding downstream 133348 22137295 ~ 22139333 (+)
G215022 NA other upstream 2617 21663084 ~ 22000809 (+)
LOC117598881 NA other upstream 2636 22000286 ~ 22000790 (+)
LOC117598899 NA other upstream 5888 21996056 ~ 21997538 (+)
LOC117598866 NA other upstream 8339 21994519 ~ 21995087 (+)
LOC117598861 NA other upstream 10285 21992460 ~ 21993141 (+)
LOC117598797 NA other downstream 1005 22004952 ~ 22005583 (+)
G215085 NA other downstream 1119 22005066 ~ 22063878 (+)
LOC117598887 NA other downstream 4543 22008490 ~ 22009299 (+)
LOC117598878 NA other downstream 10156 22014103 ~ 22014607 (+)
LOC117598938 NA other downstream 11776 22015723 ~ 22016166 (+)

Expression


Co-expression Network