LOC117598797


Basic Information

Item Value
gene id LOC117598797
gene name NA
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 22004952 ~ 22005583 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>LOC117598797
cactgaGCAGCCTGTGGTTGTGGGTTTAATACATCCATAGTGGTCATGGACACTCCCTATTCAAATAGAGTCGGGTATAAACAGCATGTTCTTGGCTGTTCTAGTTTCCAGTGAGCTCTGTGATAGATAACACTCCCATACACTTTAAATCTGGGTGAAGCAGAACTCAGAGAAGGATGATTTTAggacattgtattttatttgtactaatttcatATTCTTATGGACAGTCCCTGACCTCCTCTGCTTCTGTGGTGAAGAGACCTGGAGAGTCAGTCACTCTGTCCTGTACTGTCTCCGGATTCTCACTGAGCAGCTACTACATGAGCTGGATCCGTCAGAAACCAGGAAAAGGGCTGGAGTGGATCGGATACATTGACACTGGCACTAGCACAACATTCGCTCAGTCTCTGCAGGGCCAGTTCTCCATCACTAAAGACAccaataaaaacatgctgtaccTAGAAGTGAAGAGTCTGAAAGCTGAAGACACGGCTGTTTATCACTGTGCAGgagactcacactga

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC117598797 True 527 V_segment 0.45 2 22004952 22005583

Neighbor

gene id symbol gene type direction distance location
LOC117598775 NA coding upstream 336070 21668341 ~ 21668882 (+)
LOC117598774 NA coding upstream 339208 21664594 ~ 21665744 (+)
LOC117598848 NA coding upstream 341412 21663095 ~ 21663540 (+)
LOC117599000 NA coding upstream 343913 21660425 ~ 21661039 (+)
LOC117598992 NA coding upstream 345845 21658502 ~ 21659107 (+)
LOC113546929 NA coding downstream 531919 22537502 ~ 22548866 (+)
cckb LOC108274239 coding downstream 609276 22614859 ~ 22621980 (+)
rnf44 rnf44 coding downstream 728152 22733735 ~ 22754432 (+)
pdlim7 pdlim7 coding downstream 775783 22781366 ~ 22825233 (+)
LOC113546949 LOC108277208 coding downstream 1136131 23141714 ~ 23143760 (+)
G215069 NA non-coding upstream 9887 21916419 ~ 21995065 (+)
G215075 NA non-coding upstream 38719 21923978 ~ 21966233 (+)
LOC117598970 NA non-coding upstream 91603 21912612 ~ 21913349 (+)
LOC117598790 NA non-coding upstream 93133 21911288 ~ 21911819 (+)
LOC117598935 NA non-coding upstream 94856 21909653 ~ 21910096 (+)
G215035 NA non-coding downstream 10235 22015818 ~ 22020735 (+)
G215093 NA non-coding downstream 52761 22058344 ~ 22059756 (+)
G215095 NA non-coding downstream 71907 22077490 ~ 22133009 (+)
G215107 NA non-coding downstream 127619 22133202 ~ 22401320 (+)
LOC117598974 NA non-coding downstream 131712 22137295 ~ 22139333 (+)
LOC117598796 NA other upstream 1005 22003426 ~ 22003947 (+)
G215022 NA other upstream 4143 21663084 ~ 22000809 (+)
LOC117598881 NA other upstream 4162 22000286 ~ 22000790 (+)
LOC117598899 NA other upstream 7414 21996056 ~ 21997538 (+)
LOC117598866 NA other upstream 9865 21994519 ~ 21995087 (+)
LOC117598887 NA other downstream 2907 22008490 ~ 22009299 (+)
LOC117598878 NA other downstream 8520 22014103 ~ 22014607 (+)
LOC117598938 NA other downstream 10140 22015723 ~ 22016166 (+)
LOC117598941 NA other downstream 14222 22019805 ~ 22020248 (+)
LOC117598798 NA other downstream 21131 22026714 ~ 22031629 (+)

Expression


Co-expression Network