LOC117598807


Basic Information

Item Value
gene id LOC117598807
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 22183539 ~ 22183984 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>LOC117598807
cagtacaaacaacacacaccatgttctctacatctctactgctcctgctggcagctgcttcctatgtgcatggtgaggaactgactcagcctgcttccatgacagtccagccaggccagagtctctccatcccctgcaaGGTTTCAGATTCAGTTACGAGTGATGGTACAGCTTGgatccgacaacctgcaggaaaagctctggagtggattggaGTCATCTATGGCAGTGGGAGTACAGcttacagtgacaaactgaaaaacaagttcagcatctccagagacactgctactaagacaataacaattcgaggacagaatctgcaaactgaagacacagctgtgtattactag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC117598807 True 353 V_segment 0.48 2 22183539 22183984

Neighbor

gene id symbol gene type direction distance location
LOC117598775 NA coding upstream 514657 21668341 ~ 21668882 (+)
LOC117598774 NA coding upstream 517795 21664594 ~ 21665744 (+)
LOC117598848 NA coding upstream 519999 21663095 ~ 21663540 (+)
LOC117599000 NA coding upstream 522500 21660425 ~ 21661039 (+)
LOC117598992 NA coding upstream 524432 21658502 ~ 21659107 (+)
LOC113546929 NA coding downstream 353518 22537502 ~ 22548866 (+)
cckb LOC108274239 coding downstream 430875 22614859 ~ 22621980 (+)
rnf44 rnf44 coding downstream 549751 22733735 ~ 22754432 (+)
pdlim7 pdlim7 coding downstream 597382 22781366 ~ 22825233 (+)
LOC113546949 LOC108277208 coding downstream 957730 23141714 ~ 23143760 (+)
LOC117598956 NA non-coding upstream 1845 22181064 ~ 22181694 (+)
LOC117598859 NA non-coding upstream 3427 22179544 ~ 22180112 (+)
LOC117598949 NA non-coding upstream 9759 22173243 ~ 22173780 (+)
LOC117598871 NA non-coding upstream 11594 22170368 ~ 22171945 (+)
LOC117598874 NA non-coding upstream 22224 22160525 ~ 22161315 (+)
LOC117598808 NA non-coding downstream 9090 22193074 ~ 22193583 (+)
G215127 NA non-coding downstream 76907 22260891 ~ 22282993 (+)
G215149 NA non-coding downstream 156237 22340221 ~ 22343637 (+)
G215153 NA non-coding downstream 217966 22401950 ~ 22405524 (+)
LOC117598850 NA non-coding downstream 311224 22495208 ~ 22535776 (+)
G215036 LOC108275153 other upstream 6618 22176467 ~ 22176921 (+)
LOC117598947 NA other upstream 52357 22126928 ~ 22131182 (+)
LOC117598959 LOC108275153 other upstream 63076 22119975 ~ 22120463 (+)
LOC117598804 NA other upstream 70754 22111931 ~ 22112785 (+)
LOC117598936 NA other upstream 72718 22110378 ~ 22110821 (+)
LOC117598950 NA other downstream 10767 22194751 ~ 22195274 (+)
LOC117598809 NA other downstream 13104 22197088 ~ 22197594 (+)
LOC117598933 LOC108275153 other downstream 14955 22198939 ~ 22206286 (+)
LOC117598854 NA other downstream 24723 22208707 ~ 22209325 (+)
LOC117598895 NA other downstream 188287 22372271 ~ 22373023 (+)

Expression


Co-expression Network