LOC117598850


Basic Information

Item Value
gene id LOC117598850
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 22495208 ~ 22535776 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>LOC117598850
TTCTTTACTCTAGCAATGTTCAttcaatATTCCTGCAGTCAGACACTGATCGAGTCTGATTCAGTCATCATCAAACCTGATCAGTCTCATAAACTGACCTGCACAGCATCTGGATTGGACGTTAGTGGTTATTACATGGCTTGGATCAGACAGGCTCCTGGAAAAGGACTGAAATGGGTTGCAGCAATCTACTCTAGCAGTTACATATATTACTCCAGTGCAGCTAATGGCTGCTTCACCATCTCCAGAGACAACAGTAAGCTGCAGGTGTATCTGCACATGAACAGCGTGAGGacagaagacacagctgtgtattactgcgctcgGTCAATTACCCactACGCTTTTGACTACTGGGGAAAGGGAACGACGGTCACCGTTACTTCTgCAGTGCAAGGCCCCCCGCAGTCCCTGTTTCCCGTGTGGCAGTGCGGCTCGGCCTCGGACGGTTTAATCACTCTTGGCTGCGTCACGCGCGATTTGGCCTCCGCCGACGGACTGATCTTCAAATGGGCGGATGAGAAAGGAAGCGCGCTGACTGACGTCGTGCAATACCCGGCGGTGCGCGGGAGCGGAGGGTTCACCTCGGTGAGCCAGGTGCGCGTCAAGGCTTCCGACTGGACCCAGAGCAAGAAGTTCACGTGCCGAGTCGAGAATGCCAAAGGATACAAAGAAGCGCTCTTGCAAAAGAAAGttgtGCCCGAGCTCCCTGCATCTCTGCTTCTAACAACTCCAACCCAAACAGAAATAGACAATGGAACAGCTACCTTCATCTGCTTAGCTACACAATTTtcccctaaaacacacacatttaagtGGACTCGTGGCAGCACGGAACTCGGTAATAAGGTCAAACACACCATATTAAGCCCGGATAAAGATGCTTACACTGCTGTAAGTATTTTGGAAATCAGCGCCAATGAATGGACGGGTTCATCATCTCCAGTTAAGTGCGAATTCCACCAGAAGAAATGGACTGCGGCCAAAGAGGCGATTTATgTGTCAGTTGACTCAAAACCACCACAGGTGAAAATAATCCCACCTTGCCCCAGGGACATGCTGCTCAAAAGAGCTGGCCAGCTCGAGTGCAGGGCCGAAGGACAGGTGGGCTTCAAGGGCATTAAATGGCTTATTGGCGGTACAGAGATCTCTTCCCTAGCGGAAAAAGACGTATCTGCGGAAACCACGGTCACACTCACGACCCCGATCAGTTTCGATGAGTGGAGCGATGGCACCAAATTCACCTGCGAAGTGGAACATTCAGCATTCGCCCTCCAGTATGAAACAGTAGACTACCAAAGAGTAAATGGCAAAAAGGAATGCCCCAAGGTTTACTTGCTCGCTCCACCAGAGAGCTCAGGTGAATCGGTGACCCTGACTTGCTATGTAAAAGACTTCTACCCTAAGGAGGTGGCTGTGTCTTGGCTTGTTAACGATGAACAAGTGGACGATGAGGGCGGCTATGAGCAGAACACCACTAGAGTTATCGAGAGAGGCAACCTCTTTTCAGTGTACAGCCAGCTGATTGTGAAAACTGCAGAATGGAAGAGTGGCGCCGTGTACAGCTGCAGGGTTTATCACGAGTCCATCGAGGACCCTGTGCGCCTCATATCCAGATCCATCACTATCACTTCAAATCCACCCACCTTAGTGAATCTCAGCCTGAACGTTCCACAAACCTGCCATACGTTTTAGAAATTGTGTTGTCTGCTTTTaatgcttgttttatttttatttttgccctGTCttctatgtgttttttttttttaattaatgcaatGTCATTGTCTTGAAGTCTGTCTAATGCTTGTGTGTCCTTGGTTTTTGGAATATGTCTGATGCAATATTACACtgaaacaatgacaataaaaaaatccttcagCATGTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC117598850 True 1888 C_region 0.48 8 22495208 22535776

Neighbor

gene id symbol gene type direction distance location
LOC117598775 NA coding upstream 826326 21668341 ~ 21668882 (+)
LOC117598774 NA coding upstream 829464 21664594 ~ 21665744 (+)
LOC117598848 NA coding upstream 831668 21663095 ~ 21663540 (+)
LOC117599000 NA coding upstream 834169 21660425 ~ 21661039 (+)
LOC117598992 NA coding upstream 836101 21658502 ~ 21659107 (+)
LOC113546929 NA coding downstream 1726 22537502 ~ 22548866 (+)
cckb LOC108274239 coding downstream 79083 22614859 ~ 22621980 (+)
rnf44 rnf44 coding downstream 197959 22733735 ~ 22754432 (+)
pdlim7 pdlim7 coding downstream 245590 22781366 ~ 22825233 (+)
LOC113546949 LOC108277208 coding downstream 605938 23141714 ~ 23143760 (+)
G215153 NA non-coding upstream 89684 22401950 ~ 22405524 (+)
G215107 NA non-coding upstream 93888 22133202 ~ 22401320 (+)
G215149 NA non-coding upstream 151571 22340221 ~ 22343637 (+)
G215127 NA non-coding upstream 212215 22260891 ~ 22282993 (+)
LOC117598808 NA non-coding upstream 301625 22193074 ~ 22193583 (+)
G215294 NA non-coding downstream 188911 22724687 ~ 22726646 (+)
G215336 NA non-coding downstream 199995 22735771 ~ 22735986 (+)
G215343 NA non-coding downstream 242840 22778616 ~ 22779241 (+)
G215295 NA non-coding downstream 291245 22827021 ~ 22830832 (+)
G215350 NA non-coding downstream 305568 22841344 ~ 22909078 (+)
LOC113546930 LOC108275153 other upstream 4297 22463100 ~ 22490911 (+)
LOC113546936 NA other upstream 24530 22470179 ~ 22470678 (+)
LOC117598940 NA other upstream 97638 22397112 ~ 22397570 (+)
LOC117598922 LOC108275153 other upstream 104386 22390359 ~ 22390822 (+)
LOC117598883 NA other upstream 107059 22387697 ~ 22388149 (+)
higd2a higd2a other downstream 230038 22765814 ~ 22769636 (+)
trnat-cgu_7 NA other downstream 244510 22780286 ~ 22780576 (+)
G215347 NA other downstream 299888 22835664 ~ 22835902 (+)
G215621 LOC108277208 other downstream 601470 23137246 ~ 23170553 (+)
LOC113546919 LOC108278588 other downstream 1195678 23731454 ~ 23741390 (+)

Expression


Co-expression Network