Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC117598853 |
| gene name | NA |
| gene type | misc |
| species | striped catfish (Pangasianodon hypophthalmus) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_047607.1 |
| NCBI id | CM018553.1 |
| chromosome length | 26458119 |
| location | 21837463 ~ 21853760 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| id | description |
|---|---|
| K06856 | IGH; immunoglobulin heavy chain |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| LOC117598853 | True | 534 | V_segment | 0.45 | 2 | 21837470 | 21838092 |
| TU254599 | False | 343 | TUCP | 0.48 | 2 | 21837463 | 21853760 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC117598775 | NA | coding | upstream | 168581 | 21668341 ~ 21668882 (+) |
| LOC117598774 | NA | coding | upstream | 171719 | 21664594 ~ 21665744 (+) |
| LOC117598848 | NA | coding | upstream | 173923 | 21663095 ~ 21663540 (+) |
| LOC117599000 | NA | coding | upstream | 176424 | 21660425 ~ 21661039 (+) |
| LOC117598992 | NA | coding | upstream | 178356 | 21658502 ~ 21659107 (+) |
| LOC113546929 | NA | coding | downstream | 683742 | 22537502 ~ 22548866 (+) |
| cckb | LOC108274239 | coding | downstream | 761099 | 22614859 ~ 22621980 (+) |
| rnf44 | rnf44 | coding | downstream | 879975 | 22733735 ~ 22754432 (+) |
| pdlim7 | pdlim7 | coding | downstream | 927606 | 22781366 ~ 22825233 (+) |
| LOC113546949 | LOC108277208 | coding | downstream | 1287954 | 23141714 ~ 23143760 (+) |
| G215064 | NA | non-coding | upstream | 30120 | 21774223 ~ 21807343 (+) |
| G215055 | NA | non-coding | upstream | 119387 | 21717692 ~ 21718076 (+) |
| G215042 | NA | non-coding | upstream | 180628 | 21656261 ~ 21656835 (+) |
| G214829 | NA | non-coding | upstream | 202389 | 21634851 ~ 21635074 (+) |
| G214825 | NA | non-coding | upstream | 220169 | 21617095 ~ 21617294 (+) |
| LOC117598973 | NA | non-coding | downstream | 34271 | 21888031 ~ 21888800 (+) |
| LOC117598789 | NA | non-coding | downstream | 37838 | 21891598 ~ 21892131 (+) |
| LOC117598900 | NA | non-coding | downstream | 39409 | 21893169 ~ 21894161 (+) |
| LOC117598962 | NA | non-coding | downstream | 45148 | 21898908 ~ 21899339 (+) |
| LOC117598935 | NA | non-coding | downstream | 55893 | 21909653 ~ 21910096 (+) |
| LOC117598860 | LOC108275153 | other | upstream | 7324 | 21829547 ~ 21830139 (+) |
| LOC117598939 | NA | other | upstream | 13351 | 21823669 ~ 21824112 (+) |
| LOC117598777 | NA | other | upstream | 106394 | 21730403 ~ 21731069 (+) |
| LOC117598855 | NA | other | upstream | 110142 | 21726462 ~ 21727321 (+) |
| LOC117598966 | NA | other | upstream | 116402 | 21720633 ~ 21721061 (+) |
| LOC117598928 | LOC108275153 | other | downstream | 1969 | 21855729 ~ 21856436 (+) |
| LOC117598957 | NA | other | downstream | 10227 | 21863987 ~ 21864616 (+) |
| LOC117598937 | NA | other | downstream | 18242 | 21872002 ~ 21872445 (+) |
| G215013 | NA | other | downstream | 20379 | 21874139 ~ 21884513 (+) |
| LOC117598892 | NA | other | downstream | 20393 | 21874153 ~ 21874615 (+) |
