Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC117598855 |
| gene name | NA |
| gene type | misc |
| species | striped catfish (Pangasianodon hypophthalmus) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_047607.1 |
| NCBI id | CM018553.1 |
| chromosome length | 26458119 |
| location | 21726462 ~ 21727321 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| id | description |
|---|---|
| K06856 | IGH; immunoglobulin heavy chain |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| LOC117598855 | True | 771 | V_segment | 0.41 | 2 | 21726462 | 21727321 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC117598775 | NA | coding | upstream | 57580 | 21668341 ~ 21668882 (+) |
| LOC117598774 | NA | coding | upstream | 60718 | 21664594 ~ 21665744 (+) |
| LOC117598848 | NA | coding | upstream | 62922 | 21663095 ~ 21663540 (+) |
| LOC117599000 | NA | coding | upstream | 65423 | 21660425 ~ 21661039 (+) |
| LOC117598992 | NA | coding | upstream | 67355 | 21658502 ~ 21659107 (+) |
| LOC113546929 | NA | coding | downstream | 810181 | 22537502 ~ 22548866 (+) |
| cckb | LOC108274239 | coding | downstream | 887538 | 22614859 ~ 22621980 (+) |
| rnf44 | rnf44 | coding | downstream | 1006414 | 22733735 ~ 22754432 (+) |
| pdlim7 | pdlim7 | coding | downstream | 1054045 | 22781366 ~ 22825233 (+) |
| LOC113546949 | LOC108277208 | coding | downstream | 1414393 | 23141714 ~ 23143760 (+) |
| G215055 | NA | non-coding | upstream | 8386 | 21717692 ~ 21718076 (+) |
| G215042 | NA | non-coding | upstream | 69627 | 21656261 ~ 21656835 (+) |
| G214829 | NA | non-coding | upstream | 91388 | 21634851 ~ 21635074 (+) |
| G214825 | NA | non-coding | upstream | 109168 | 21617095 ~ 21617294 (+) |
| G214747 | LOC108280967 | non-coding | upstream | 170061 | 21551549 ~ 21556401 (+) |
| G215064 | NA | non-coding | downstream | 46902 | 21774223 ~ 21807343 (+) |
| LOC117598973 | NA | non-coding | downstream | 160710 | 21888031 ~ 21888800 (+) |
| LOC117598789 | NA | non-coding | downstream | 164277 | 21891598 ~ 21892131 (+) |
| LOC117598900 | NA | non-coding | downstream | 165848 | 21893169 ~ 21894161 (+) |
| LOC117598962 | NA | non-coding | downstream | 171587 | 21898908 ~ 21899339 (+) |
| LOC117598966 | NA | other | upstream | 5401 | 21720633 ~ 21721061 (+) |
| G215008 | LOC108275153 | other | upstream | 5403 | 21711194 ~ 21721059 (+) |
| LOC117598875 | NA | other | upstream | 11838 | 21713929 ~ 21714624 (+) |
| LOC117598918 | LOC108275153 | other | upstream | 14684 | 21711315 ~ 21711778 (+) |
| G215010 | LOC108275153 | other | upstream | 14693 | 21664558 ~ 21711769 (+) |
| LOC117598777 | NA | other | downstream | 3082 | 21730403 ~ 21731069 (+) |
| LOC117598939 | NA | other | downstream | 96348 | 21823669 ~ 21824112 (+) |
| LOC117598860 | LOC108275153 | other | downstream | 102226 | 21829547 ~ 21830139 (+) |
| LOC117598953 | NA | other | downstream | 104444 | 21831765 ~ 21839896 (+) |
| LOC117598853 | NA | other | downstream | 110142 | 21837463 ~ 21853760 (+) |
