Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC117598860 |
| gene name | LOC108275153 |
| gene type | misc |
| species | striped catfish (Pangasianodon hypophthalmus) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_047607.1 |
| NCBI id | CM018553.1 |
| chromosome length | 26458119 |
| location | 21829547 ~ 21830139 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| LOC117598860 | True | 500 | V_segment | 0.45 | 2 | 21829547 | 21830139 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC117598775 | NA | coding | upstream | 160665 | 21668341 ~ 21668882 (+) |
| LOC117598774 | NA | coding | upstream | 163803 | 21664594 ~ 21665744 (+) |
| LOC117598848 | NA | coding | upstream | 166007 | 21663095 ~ 21663540 (+) |
| LOC117599000 | NA | coding | upstream | 168508 | 21660425 ~ 21661039 (+) |
| LOC117598992 | NA | coding | upstream | 170440 | 21658502 ~ 21659107 (+) |
| LOC113546929 | NA | coding | downstream | 707363 | 22537502 ~ 22548866 (+) |
| cckb | LOC108274239 | coding | downstream | 784720 | 22614859 ~ 22621980 (+) |
| rnf44 | rnf44 | coding | downstream | 903596 | 22733735 ~ 22754432 (+) |
| pdlim7 | pdlim7 | coding | downstream | 951227 | 22781366 ~ 22825233 (+) |
| LOC113546949 | LOC108277208 | coding | downstream | 1311575 | 23141714 ~ 23143760 (+) |
| G215064 | NA | non-coding | upstream | 22204 | 21774223 ~ 21807343 (+) |
| G215055 | NA | non-coding | upstream | 111471 | 21717692 ~ 21718076 (+) |
| G215042 | NA | non-coding | upstream | 172712 | 21656261 ~ 21656835 (+) |
| G214829 | NA | non-coding | upstream | 194473 | 21634851 ~ 21635074 (+) |
| G214825 | NA | non-coding | upstream | 212253 | 21617095 ~ 21617294 (+) |
| LOC117598973 | NA | non-coding | downstream | 57892 | 21888031 ~ 21888800 (+) |
| LOC117598789 | NA | non-coding | downstream | 61459 | 21891598 ~ 21892131 (+) |
| LOC117598900 | NA | non-coding | downstream | 63030 | 21893169 ~ 21894161 (+) |
| LOC117598962 | NA | non-coding | downstream | 68769 | 21898908 ~ 21899339 (+) |
| LOC117598935 | NA | non-coding | downstream | 79514 | 21909653 ~ 21910096 (+) |
| LOC117598939 | NA | other | upstream | 5435 | 21823669 ~ 21824112 (+) |
| LOC117598777 | NA | other | upstream | 98478 | 21730403 ~ 21731069 (+) |
| LOC117598855 | NA | other | upstream | 102226 | 21726462 ~ 21727321 (+) |
| LOC117598966 | NA | other | upstream | 108486 | 21720633 ~ 21721061 (+) |
| G215008 | LOC108275153 | other | upstream | 108488 | 21711194 ~ 21721059 (+) |
| LOC117598953 | NA | other | downstream | 1626 | 21831765 ~ 21839896 (+) |
| LOC117598853 | NA | other | downstream | 7324 | 21837463 ~ 21853760 (+) |
| LOC117598912 | NA | other | downstream | 14707 | 21844846 ~ 21845329 (+) |
| LOC117598851 | NA | other | downstream | 17219 | 21847358 ~ 21848007 (+) |
| LOC117598872 | NA | other | downstream | 19117 | 21849256 ~ 21850054 (+) |
