LOC117598868


Basic Information

Item Value
gene id LOC117598868
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 21675638 ~ 21676807 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>LOC117598868
TGATATACATTCAGCTCAACAACATACCAgcagtttgtgttcatttacagcaacagtaatcattttaattctttgAGATGGGACTAGGCAGAGTTTTGAGTTACTTTACTCTAGCAATGTTCATTCAATATTCCTGCAGTCAGACACTGATCGAGTCTGATTCAGTCATCATCAAACCTGATCAGTCTCATAAACTGACCTGCACAGCATCTGGATTTAACTTTGGTAGCTACTGGATGGCTTGGATCAGACAGGCTCCTGGAAAAGGACTGGAATTTGTTGCAACTATCGAGTATGATAGTGATAGGAAGTATTACTCCAGTGCAGTTAAAGGCCGTTTTACCATCTCCAGAGACAACAGTAAGCAGCAGGTGTATCTGCACATGAACAGCGTGAGGacagaagacacagctgtgtattactgcgcccgacacacacagtgatacttCTCCTTAGacatcagtacaaaaacacatgcttgctatagtcacatgacaagctcaCATGTTCATAAGCAGTGTATTCATGGAGCTCAAAGAACCAAAATGTTTTGACTTTTACTGCATGTGGCTTATTGTGAACATTGTCTGGACATTTATGCTGGTATAAGATTACTTAGGTCAGAGTCagttctgaatatatatatatatatggtacagAGGGtaatgttgccacctcacagcttcagggcccTCGGTTTGATCCTGGTCATACAAAATGCTCCACATTAtaattcttactttttttaCTTAGTACTTTAGTtctatttgagttttttttaaaacaagttgCTTTAAAATCACTTCTTTTAGATCTGAGTATTTTGAAAACTGGACCTTTGTGCCTCTAGAGGGCAGTCTGTGCAAACTCAACCATCTCAGTCTGTTGCTATCTGCACTTTTAGGCCCCGTCTCTTTTCACAGGCTGCTATGACTGCATCCAGCACCATGACTCTCAGATTAAACTCCAGGAAGATAATTGCTTGTTGTTGCTTATATCATTACTTTTGCAGAGTCTTGTgagacaaaatataattaaataaatgcaatgctaTTCCTTTTATC

Function

GO: NA

KEGG:

id description
ko05150 Staphylococcus aureus infection

RNA

RNA id representative length rna type GC content exon number start site end site
LOC117598868 True 1064 V_segment 0.39 2 21675638 21676807

Neighbor

gene id symbol gene type direction distance location
LOC117598919 NA coding downstream 2308 21672822 ~ 21673330 (-)
b4galt1l b4galt1,LOC108277608,LOC106602599,LOC106602598 coding downstream 61763 21586098 ~ 21613875 (-)
srp72 srp72,LOC107662169,LOC107731365,LOC107552350,LOC107729332 coding downstream 295422 21368754 ~ 21380216 (-)
arl9 arl9 coding downstream 308526 21360562 ~ 21367112 (-)
ints10 ints10,LOC105894096,LOC105894103 coding downstream 473769 21184962 ~ 21201869 (-)
LOC117598954 NA coding upstream 7217 21684024 ~ 21684645 (-)
LOC117598776 NA coding upstream 8890 21685697 ~ 21691576 (-)
LOC117598896 NA coding upstream 16376 21693183 ~ 21693634 (-)
topaz1 topaz1 coding upstream 875917 22552724 ~ 22582102 (-)
trak1b LOC108275079,LOC108414239,LOC107706145 coding upstream 953074 22629881 ~ 22644263 (-)
G215168 NA non-coding downstream 29744 21645119 ~ 21645894 (-)
G214980 NA non-coding downstream 40774 21634658 ~ 21634864 (-)
G214978 rest,LOC106604639 non-coding downstream 43771 21628129 ~ 21631867 (-)
G214977 NA non-coding downstream 53717 21620678 ~ 21621921 (-)
G214976 NA non-coding downstream 58806 21616602 ~ 21616832 (-)
G215194 NA non-coding upstream 46664 21723471 ~ 22134451 (-)
G215217 NA non-coding upstream 345279 22022086 ~ 22078908 (-)
G215171 NA non-coding upstream 348676 22025483 ~ 22082843 (-)
G215221 NA non-coding upstream 403355 22080162 ~ 22136007 (-)
G215224 NA non-coding upstream 444649 22121456 ~ 22133365 (-)
LOC113528016 thegl other downstream 316448 21352281 ~ 21359190 (-)
slc16a2 LOC108279893,LOC107596364 other downstream 403131 21236802 ~ 21272507 (-)
fgf2 fgf2,LOC107717315 other downstream 647557 21014439 ~ 21028081 (-)
spry1 spry1 other downstream 770367 20900057 ~ 20905271 (-)
hs3st1 hs3st1 other downstream 1462009 20205339 ~ 20213629 (-)
G215188 NA other upstream 8897 21685704 ~ 21970414 (-)
LOC117598877 NA other upstream 18065 21694872 ~ 21695359 (-)
G215182 LOC108275153 other upstream 19853 21696660 ~ 22285703 (-)
LOC117598964 NA other upstream 20936 21697743 ~ 21698174 (-)
LOC117598880 NA other upstream 22485 21699292 ~ 21699794 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location