Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC117598872 |
| gene name | NA |
| gene type | misc |
| species | striped catfish (Pangasianodon hypophthalmus) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_047607.1 |
| NCBI id | CM018553.1 |
| chromosome length | 26458119 |
| location | 21849256 ~ 21850054 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| id | name | namespace |
|---|---|---|
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds | molecular_function |
| GO:0016798 | hydrolase activity, acting on glycosyl bonds | molecular_function |
| GO:0061783 | peptidoglycan muralytic activity | molecular_function |
| GO:0003796 | lysozyme activity | molecular_function |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| LOC117598872 | True | 701 | V_segment | 0.41 | 2 | 21849256 | 21850054 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC117598775 | NA | coding | upstream | 180374 | 21668341 ~ 21668882 (+) |
| LOC117598774 | NA | coding | upstream | 183512 | 21664594 ~ 21665744 (+) |
| LOC117598848 | NA | coding | upstream | 185716 | 21663095 ~ 21663540 (+) |
| LOC117599000 | NA | coding | upstream | 188217 | 21660425 ~ 21661039 (+) |
| LOC117598992 | NA | coding | upstream | 190149 | 21658502 ~ 21659107 (+) |
| LOC113546929 | NA | coding | downstream | 687448 | 22537502 ~ 22548866 (+) |
| cckb | LOC108274239 | coding | downstream | 764805 | 22614859 ~ 22621980 (+) |
| rnf44 | rnf44 | coding | downstream | 883681 | 22733735 ~ 22754432 (+) |
| pdlim7 | pdlim7 | coding | downstream | 931312 | 22781366 ~ 22825233 (+) |
| LOC113546949 | LOC108277208 | coding | downstream | 1291660 | 23141714 ~ 23143760 (+) |
| G215064 | NA | non-coding | upstream | 41913 | 21774223 ~ 21807343 (+) |
| G215055 | NA | non-coding | upstream | 131180 | 21717692 ~ 21718076 (+) |
| G215042 | NA | non-coding | upstream | 192421 | 21656261 ~ 21656835 (+) |
| G214829 | NA | non-coding | upstream | 214182 | 21634851 ~ 21635074 (+) |
| G214825 | NA | non-coding | upstream | 231962 | 21617095 ~ 21617294 (+) |
| LOC117598973 | NA | non-coding | downstream | 37977 | 21888031 ~ 21888800 (+) |
| LOC117598789 | NA | non-coding | downstream | 41544 | 21891598 ~ 21892131 (+) |
| LOC117598900 | NA | non-coding | downstream | 43115 | 21893169 ~ 21894161 (+) |
| LOC117598962 | NA | non-coding | downstream | 48854 | 21898908 ~ 21899339 (+) |
| LOC117598935 | NA | non-coding | downstream | 59599 | 21909653 ~ 21910096 (+) |
| LOC117598851 | NA | other | upstream | 1249 | 21847358 ~ 21848007 (+) |
| LOC117598912 | NA | other | upstream | 3927 | 21844846 ~ 21845329 (+) |
| LOC117598953 | NA | other | upstream | 9360 | 21831765 ~ 21839896 (+) |
| LOC117598860 | LOC108275153 | other | upstream | 19117 | 21829547 ~ 21830139 (+) |
| LOC117598939 | NA | other | upstream | 25144 | 21823669 ~ 21824112 (+) |
| LOC117598928 | LOC108275153 | other | downstream | 5675 | 21855729 ~ 21856436 (+) |
| LOC117598957 | NA | other | downstream | 13933 | 21863987 ~ 21864616 (+) |
| LOC117598937 | NA | other | downstream | 21948 | 21872002 ~ 21872445 (+) |
| G215013 | NA | other | downstream | 24085 | 21874139 ~ 21884513 (+) |
| LOC117598892 | NA | other | downstream | 24099 | 21874153 ~ 21874615 (+) |
