LOC117598878


Basic Information

Item Value
gene id LOC117598878
gene name NA
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 22014103 ~ 22014607 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>LOC117598878
AGGAATCATGAGCTggccttttcttcttctgataTCCTCTGTGTCCTATGTGCATGGCATCAGTCTGACCTCGTCTCCTGCTGAGGTTAAACCTCCCGGAGCCTCAGTGAAGTTGTCCTGTCAGATTTCTGGCTATGCCCTCACTAGCTACAGCACAGGCTGGATCAGGCAGCCTCCAGGAAAAGGCTTGGAGTGGATCGGGATCATATGGAGTGATGGAAGCATAGACTCTGGAGCTTCCTTTAAAACTCgcttcagcatctccagagacacgAGCAACAATGTGCTTTACTTAGATATCAGCAGCCTGGTGCCAGAAGACACGGCTGTTTATTATtgtgcaagacacacacacagctgtacacctCAGTGAGAGGACTGTACAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC117598878 True 387 V_segment 0.49 2 22014103 22014607

Neighbor

gene id symbol gene type direction distance location
LOC117598775 NA coding upstream 345221 21668341 ~ 21668882 (+)
LOC117598774 NA coding upstream 348359 21664594 ~ 21665744 (+)
LOC117598848 NA coding upstream 350563 21663095 ~ 21663540 (+)
LOC117599000 NA coding upstream 353064 21660425 ~ 21661039 (+)
LOC117598992 NA coding upstream 354996 21658502 ~ 21659107 (+)
LOC113546929 NA coding downstream 522895 22537502 ~ 22548866 (+)
cckb LOC108274239 coding downstream 600252 22614859 ~ 22621980 (+)
rnf44 rnf44 coding downstream 719128 22733735 ~ 22754432 (+)
pdlim7 pdlim7 coding downstream 766759 22781366 ~ 22825233 (+)
LOC113546949 LOC108277208 coding downstream 1127107 23141714 ~ 23143760 (+)
G215069 NA non-coding upstream 19038 21916419 ~ 21995065 (+)
G215075 NA non-coding upstream 47870 21923978 ~ 21966233 (+)
LOC117598970 NA non-coding upstream 100754 21912612 ~ 21913349 (+)
LOC117598790 NA non-coding upstream 102284 21911288 ~ 21911819 (+)
LOC117598935 NA non-coding upstream 104007 21909653 ~ 21910096 (+)
G215035 NA non-coding downstream 1211 22015818 ~ 22020735 (+)
G215093 NA non-coding downstream 43737 22058344 ~ 22059756 (+)
G215095 NA non-coding downstream 62883 22077490 ~ 22133009 (+)
G215107 NA non-coding downstream 118595 22133202 ~ 22401320 (+)
LOC117598974 NA non-coding downstream 122688 22137295 ~ 22139333 (+)
LOC117598887 NA other upstream 4804 22008490 ~ 22009299 (+)
LOC117598797 NA other upstream 8520 22004952 ~ 22005583 (+)
LOC117598796 NA other upstream 10156 22003426 ~ 22003947 (+)
LOC117598881 NA other upstream 13313 22000286 ~ 22000790 (+)
LOC117598899 NA other upstream 16565 21996056 ~ 21997538 (+)
LOC117598938 NA other downstream 1116 22015723 ~ 22016166 (+)
LOC117598941 NA other downstream 5198 22019805 ~ 22020248 (+)
LOC117598798 NA other downstream 12107 22026714 ~ 22031629 (+)
LOC117598799 NA other downstream 21071 22035678 ~ 22037246 (+)
LOC117598942 NA other downstream 22728 22037335 ~ 22037911 (+)

Expression


Co-expression Network