LOC117598885


Basic Information

Item Value
gene id LOC117598885
gene name NA
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 21883969 ~ 21884423 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>LOC117598885
accatgatctctacatccctactgctgctgctgctggcagccgtacactgtgttcactgtgttgagctgatccagaccggatccacagtattaacccctggtcagtcaatgactctgacctgtaAAGTGTCTGGATATTCATTAACTGATAGCAGCTACTGTACAAACTGGatacgacaacctgcaggaaaagctctggagtggatcgGAAATATATGTTATGATGGTAACACTTACtacagtgagaaactgaaaagcaggtttcaggtttccagagacacgtccagcagcacagtaacattaacagggcagaagatgcagactgaagacacagctgtgtattactgcgctcgtcacacacagtga

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC117598885 True 366 V_segment 0.46 2 21883969 21884423

Neighbor

gene id symbol gene type direction distance location
LOC117598775 NA coding upstream 215087 21668341 ~ 21668882 (+)
LOC117598774 NA coding upstream 218225 21664594 ~ 21665744 (+)
LOC117598848 NA coding upstream 220429 21663095 ~ 21663540 (+)
LOC117599000 NA coding upstream 222930 21660425 ~ 21661039 (+)
LOC117598992 NA coding upstream 224862 21658502 ~ 21659107 (+)
LOC113546929 NA coding downstream 653079 22537502 ~ 22548866 (+)
cckb LOC108274239 coding downstream 730436 22614859 ~ 22621980 (+)
rnf44 rnf44 coding downstream 849312 22733735 ~ 22754432 (+)
pdlim7 pdlim7 coding downstream 896943 22781366 ~ 22825233 (+)
LOC113546949 LOC108277208 coding downstream 1257291 23141714 ~ 23143760 (+)
G215064 NA non-coding upstream 76626 21774223 ~ 21807343 (+)
G215055 NA non-coding upstream 165893 21717692 ~ 21718076 (+)
G215042 NA non-coding upstream 227134 21656261 ~ 21656835 (+)
G214829 NA non-coding upstream 248895 21634851 ~ 21635074 (+)
G214825 NA non-coding upstream 266675 21617095 ~ 21617294 (+)
LOC117598973 NA non-coding downstream 3608 21888031 ~ 21888800 (+)
LOC117598789 NA non-coding downstream 7175 21891598 ~ 21892131 (+)
LOC117598900 NA non-coding downstream 8746 21893169 ~ 21894161 (+)
LOC117598962 NA non-coding downstream 14485 21898908 ~ 21899339 (+)
LOC117598935 NA non-coding downstream 25230 21909653 ~ 21910096 (+)
LOC117598892 NA other upstream 9354 21874153 ~ 21874615 (+)
LOC117598937 NA other upstream 11524 21872002 ~ 21872445 (+)
LOC117598957 NA other upstream 19353 21863987 ~ 21864616 (+)
LOC117598928 LOC108275153 other upstream 27533 21855729 ~ 21856436 (+)
LOC117598853 NA other upstream 30209 21837463 ~ 21853760 (+)
LOC117598934 NA other downstream 712 21885135 ~ 21885578 (+)
LOC117598788 NA other downstream 2253 21886676 ~ 21887424 (+)
G215072 NA other downstream 3608 21888031 ~ 22113953 (+)
LOC117598791 LOC108275153 other downstream 35501 21919924 ~ 21977381 (+)
LOC117598968 NA other downstream 92537 21976960 ~ 21979634 (+)

Expression


Co-expression Network