LOC117598887


Basic Information

Item Value
gene id LOC117598887
gene name NA
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 22008490 ~ 22009299 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>LOC117598887
catgatctctacatccctactgctgctgctgctggcagccgtacactgtgttcactgtgttgagctgatccagaccggatccacagtattaacccctggtcagtcaatgactctgacctgtaAAGTGTCTGGATATTCATTAACTGATAGCAGCTACTGTATAAACTGGatacgacaacctgcaggaaaagctctggagagGGTCGGAGAGATATGTGGTGGCGGTGACACTTACtacagtgagaaactgaaaagcaggtttcaggtttccagagacacgtccagcagcacagtaacattaacagggcagaagatgcagactgaagacacagctgtgtattactgcgctcgtgaaccacagtgagacagatcaacaacatccctgtacaaaaacacccagtacAGAAAACTCTTAAGGGCAGTGAAACGGTGTACAGTCTCAGTATGTTCAGTGACACTGTTTCATGCGTAGTGTATATTATTACTAACATGCTTAAAAACAATCAGAGGATGTAGTAAATAATCCAGAGATCTGTTTTATGatgtcagaaatatttttccCACAGAagaccaaaaagaaaaacaaaattactAACATTTACAAAACCATTGCTGGCTGTTGAAGACTTCCAATCAGTGATTATTGAATCCACACACCATCAAGACTACTGaatacttcaagagagagaaaaaaatagtcaCATGAGGGACAGACTGATAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC117598887 True 721 V_segment 0.42 2 22008490 22009299

Neighbor

gene id symbol gene type direction distance location
LOC117598775 NA coding upstream 339608 21668341 ~ 21668882 (+)
LOC117598774 NA coding upstream 342746 21664594 ~ 21665744 (+)
LOC117598848 NA coding upstream 344950 21663095 ~ 21663540 (+)
LOC117599000 NA coding upstream 347451 21660425 ~ 21661039 (+)
LOC117598992 NA coding upstream 349383 21658502 ~ 21659107 (+)
LOC113546929 NA coding downstream 528203 22537502 ~ 22548866 (+)
cckb LOC108274239 coding downstream 605560 22614859 ~ 22621980 (+)
rnf44 rnf44 coding downstream 724436 22733735 ~ 22754432 (+)
pdlim7 pdlim7 coding downstream 772067 22781366 ~ 22825233 (+)
LOC113546949 LOC108277208 coding downstream 1132415 23141714 ~ 23143760 (+)
G215069 NA non-coding upstream 13425 21916419 ~ 21995065 (+)
G215075 NA non-coding upstream 42257 21923978 ~ 21966233 (+)
LOC117598970 NA non-coding upstream 95141 21912612 ~ 21913349 (+)
LOC117598790 NA non-coding upstream 96671 21911288 ~ 21911819 (+)
LOC117598935 NA non-coding upstream 98394 21909653 ~ 21910096 (+)
G215035 NA non-coding downstream 6519 22015818 ~ 22020735 (+)
G215093 NA non-coding downstream 49045 22058344 ~ 22059756 (+)
G215095 NA non-coding downstream 68191 22077490 ~ 22133009 (+)
G215107 NA non-coding downstream 123903 22133202 ~ 22401320 (+)
LOC117598974 NA non-coding downstream 127996 22137295 ~ 22139333 (+)
LOC117598797 NA other upstream 2907 22004952 ~ 22005583 (+)
LOC117598796 NA other upstream 4543 22003426 ~ 22003947 (+)
LOC117598881 NA other upstream 7700 22000286 ~ 22000790 (+)
LOC117598899 NA other upstream 10952 21996056 ~ 21997538 (+)
LOC117598866 NA other upstream 13403 21994519 ~ 21995087 (+)
LOC117598878 NA other downstream 4804 22014103 ~ 22014607 (+)
LOC117598938 NA other downstream 6424 22015723 ~ 22016166 (+)
LOC117598941 NA other downstream 10506 22019805 ~ 22020248 (+)
LOC117598798 NA other downstream 17415 22026714 ~ 22031629 (+)
LOC117598799 NA other downstream 26379 22035678 ~ 22037246 (+)

Expression


Co-expression Network