LOC117598890


Basic Information

Item Value
gene id LOC117598890
gene name NA
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 22068955 ~ 22069825 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>LOC117598890
TTTGAACCATTTATGCTGATATACATTCAGCTCAACAACATACCAgcagtttgtgttcatttacagcaacagtgatcattttaattctttGAGATGGGACTAGGCAGAGTTTTGAGTTACTTTACTCTAGCAATCTTCATTCAATATTCCTGCAGTCAGACATTGATCGAGTCTGATTCAGTCATCATCAAACCTGATCAGTCTCATAAACTGACCTGCACAGCATCTGGATTGGACGTTAGTGGCTATTACTTGGCTTGGATCAGACAGGCTCCTGGAAAAGGACTGGAATGGGTTGCAGCAATGTACTCTAGCAGTCACATATATTACTCCAGTGCAGTTAAAGGCCGCTTTACCATCTCCAGAGACGACAGTAAGCTGCAGGTGTATCTGCACATGAACAGCGTGAGGacagaagacacagctgtgtattactgcgcccGCGACCCACAGTGATACTTCTCCTTAGacatcagtacaaaaacacatgcttgctatagtcacatgacaagctcaCATTTTCATAAGCAGTGTATTCATGGAGCTCAAAGAACCAAAATGTTTTGACTTTTACTGCATGTGGCTTATTGTGAACATTGTCTGGACATTTATGCTGGTATAAGATTACTTAGGTCAGAGTCagttctgaatatatatatatatatatggtacagAGGGtaatgttgccacctcacagcttcagggcccTCGGTTTGATCCTGGTCATACAAAATGCTCCACATTAtaattcttactttttttaCTTAGTA

Function

GO:

id name namespace
GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds molecular_function
GO:0016798 hydrolase activity, acting on glycosyl bonds molecular_function
GO:0061783 peptidoglycan muralytic activity molecular_function
GO:0003796 lysozyme activity molecular_function

KEGG:

id description
ko05152 Tuberculosis

RNA

RNA id representative length rna type GC content exon number start site end site
LOC117598890 True 770 V_segment 0.41 2 22068955 22069825

Neighbor

gene id symbol gene type direction distance location
LOC117598775 NA coding upstream 400073 21668341 ~ 21668882 (+)
LOC117598774 NA coding upstream 403211 21664594 ~ 21665744 (+)
LOC117598848 NA coding upstream 405415 21663095 ~ 21663540 (+)
LOC117599000 NA coding upstream 407916 21660425 ~ 21661039 (+)
LOC117598992 NA coding upstream 409848 21658502 ~ 21659107 (+)
LOC113546929 NA coding downstream 467677 22537502 ~ 22548866 (+)
cckb LOC108274239 coding downstream 545034 22614859 ~ 22621980 (+)
rnf44 rnf44 coding downstream 663910 22733735 ~ 22754432 (+)
pdlim7 pdlim7 coding downstream 711541 22781366 ~ 22825233 (+)
LOC113546949 LOC108277208 coding downstream 1071889 23141714 ~ 23143760 (+)
G215093 NA non-coding upstream 9199 22058344 ~ 22059756 (+)
G215035 NA non-coding upstream 48220 22015818 ~ 22020735 (+)
G215069 NA non-coding upstream 73890 21916419 ~ 21995065 (+)
G215075 NA non-coding upstream 102722 21923978 ~ 21966233 (+)
LOC117598970 NA non-coding upstream 155606 21912612 ~ 21913349 (+)
G215095 NA non-coding downstream 7665 22077490 ~ 22133009 (+)
G215107 NA non-coding downstream 63377 22133202 ~ 22401320 (+)
LOC117598974 NA non-coding downstream 67470 22137295 ~ 22139333 (+)
LOC117598906 NA non-coding downstream 70959 22140784 ~ 22141255 (+)
LOC117598961 NA non-coding downstream 72260 22142085 ~ 22142516 (+)
LOC117598943 NA other upstream 3872 22064562 ~ 22065083 (+)
G214998 LOC108275153 other upstream 3958 22039652 ~ 22064997 (+)
LOC117598916 NA other upstream 5052 22063274 ~ 22063903 (+)
G215085 NA other upstream 5077 22005066 ~ 22063878 (+)
LOC117598904 NA other upstream 14606 22053883 ~ 22054349 (+)
LOC117598801 NA other downstream 3236 22073061 ~ 22073569 (+)
LOC117598965 LOC108275153 other downstream 5580 22075405 ~ 22087412 (+)
G215005 LOC108275153 other downstream 6421 22076246 ~ 22110810 (+)
LOC117598856 LOC108275153 other downstream 6458 22076283 ~ 22076828 (+)
LOC117598802 NA other downstream 13087 22082912 ~ 22085249 (+)

Expression


Co-expression Network