LOC117598891


Basic Information

Item Value
gene id LOC117598891
gene name NA
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 21980953 ~ 21981815 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>LOC117598891
AgcagtttgtgttcatttacagcaacagtaatcattttaattctttgAGATGGGACTAGGCAGAGTTTTGAGTTACTTTATTCTAGCAATATTCATTCACTATTCCTGCAGTCAGACATTGATCGAGTCTGATTCAGTCATCATCAAACCTGATCAGTCTCATAAACTGACCTGCACAGCATCTGGATTTAACTTTGGTAGCTACTGGATGGCTTGGATCAGACAGGCTCCTGGAAAAGGACTGGAATTTGTTGCAGCAATCTACAGCAGTAGTAGCATATATTACTCCAGTGCAGTTAAAGGCCGCTTCACCATCTCCAGAGACGACAGTAAGCTGCAGGTGTATCTGCACATGAACAGCGTGAGGacagaagacacagctgtgtattactgcgcccGTGACCCACAGTGATACTTCTCCTTAGacatcagtacaaaaacacatgcttgctatagtcacatgacaagctcaCATTTTCATAAGCAGTGTATTCATGGAGCTCAAAGAACCAAAATGTTTTGACTTTTACTGTATGTGGCTTATTGTGAACATTGTCTGGACATTTATGCTGGTATAAGATTACTTGGGTCAGAGTCagttctgaatatatatatatatatggtacagAGGGtaatgttgccacctcacagcttcagggcccTCGGTTTGATCCTGGTCATACAAAATGCTCCACATTAtaattcttactttttttaCTTAGTACTTTAGCtctatttgagtt
>TU254667
gcagtttgtgttcatttacagcaacagtaatcattttaattctttgAGATGGGACTAGGCAGAGTTTTGAGTTACTTTATTCTAGCAATATTCATTCACTATTCCTGCAGTCAGACATTGATCGAGTCTGATTCAGTCATCATCAAACCTGATCAGTCTCATAAACTGACCTGCACAGCATCTGGATTTAACTTTGGTAGCTACTGGATGGCTTGGATCAGACAGGCTCCTGGAAAAGGACTGGAATTTGTTGCAGCAATCTACAGCAGTAGTAGCATATATTACTCCAGTGCAGTTAAAGGCCGCTTCACCATCTCCAGAGACGACAGTAAGCTGCAGGTGTATCTGCACATGAACAGCGTGAGGacagaagacacagctgtgtattactgcgcccGTGACCCACAGTGATACTTCTCCTTAGacatcagtacaaaaacacatgcttgctatagtcacatgacaagctcaCATTTTCATAAGCAGTGTATTCATGGAGCTCAAAGAACCAAAATGTTTTGACTTTTACTGTATGTGGCTTATTGTGAACATTGTCTGGACATTTATGCTGGTATAAGATTACTTGGGTCAGAGTCagttctgaatatatatatatatatggtacagAGGGtaatgttgccacctcacagcttcagggcccTCGGTTTGATCCTGGTCATACAAAATGCTCCACATTAtaattcttactttttttaCTTAGTACTTTAGCtctatttgagttttttttaacaagttgc

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC117598891 False 743 V_segment 0.40 2 21980953 21981799
TU254667 True 758 TUCP 0.40 2 21980954 21981815

Neighbor

gene id symbol gene type direction distance location
LOC117598775 NA coding upstream 312071 21668341 ~ 21668882 (+)
LOC117598774 NA coding upstream 315209 21664594 ~ 21665744 (+)
LOC117598848 NA coding upstream 317413 21663095 ~ 21663540 (+)
LOC117599000 NA coding upstream 319914 21660425 ~ 21661039 (+)
LOC117598992 NA coding upstream 321846 21658502 ~ 21659107 (+)
LOC113546929 NA coding downstream 555687 22537502 ~ 22548866 (+)
cckb LOC108274239 coding downstream 633044 22614859 ~ 22621980 (+)
rnf44 rnf44 coding downstream 751920 22733735 ~ 22754432 (+)
pdlim7 pdlim7 coding downstream 799551 22781366 ~ 22825233 (+)
LOC113546949 LOC108277208 coding downstream 1159899 23141714 ~ 23143760 (+)
G215075 NA non-coding upstream 14720 21923978 ~ 21966233 (+)
LOC117598970 NA non-coding upstream 67604 21912612 ~ 21913349 (+)
LOC117598790 NA non-coding upstream 69134 21911288 ~ 21911819 (+)
LOC117598935 NA non-coding upstream 70857 21909653 ~ 21910096 (+)
LOC117598962 NA non-coding upstream 81614 21898908 ~ 21899339 (+)
G215035 NA non-coding downstream 34003 22015818 ~ 22020735 (+)
G215093 NA non-coding downstream 76529 22058344 ~ 22059756 (+)
G215095 NA non-coding downstream 95675 22077490 ~ 22133009 (+)
G215107 NA non-coding downstream 151387 22133202 ~ 22401320 (+)
LOC117598974 NA non-coding downstream 155480 22137295 ~ 22139333 (+)
LOC117598968 NA other upstream 1319 21976960 ~ 21979634 (+)
LOC117598791 LOC108275153 other upstream 3572 21919924 ~ 21977381 (+)
LOC117598788 NA other upstream 93529 21886676 ~ 21887424 (+)
LOC117598934 NA other upstream 95375 21885135 ~ 21885578 (+)
G215013 NA other upstream 96440 21874139 ~ 21884513 (+)
LOC117598876 NA other downstream 5134 21986949 ~ 21987425 (+)
LOC117598905 NA other downstream 6768 21988583 ~ 21989238 (+)
LOC117598861 NA other downstream 10645 21992460 ~ 21993141 (+)
LOC117598866 NA other downstream 12704 21994519 ~ 21995087 (+)
G215073 NA other downstream 12770 21994585 ~ 22029295 (+)

Expression


Co-expression Network