Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC117598896 |
| gene name | NA |
| gene type | coding |
| species | striped catfish (Pangasianodon hypophthalmus) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_047607.1 |
| NCBI id | CM018553.1 |
| chromosome length | 26458119 |
| location | 21693183 ~ 21693634 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| LOC117598896 | True | 363 | V_segment | 0.50 | 2 | 21693183 | 21693634 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC117598776 | NA | coding | downstream | 1607 | 21685697 ~ 21691576 (-) |
| LOC117598954 | NA | coding | downstream | 8538 | 21684024 ~ 21684645 (-) |
| LOC113546932 | NA | coding | downstream | 9750 | 21672162 ~ 21683433 (-) |
| LOC117598868 | NA | coding | downstream | 16376 | 21675638 ~ 21676807 (-) |
| LOC117598919 | NA | coding | downstream | 19853 | 21672822 ~ 21673330 (-) |
| topaz1 | topaz1 | coding | upstream | 859090 | 22552724 ~ 22582102 (-) |
| trak1b | LOC108275079,LOC108414239,LOC107706145 | coding | upstream | 936247 | 22629881 ~ 22644263 (-) |
| LOC113546927 | ctnnb1,LOC108256545,LOC108414240,LOC103034575,LOC107710337,LOC107706261,LOC107688361,LOC107654753 | coding | upstream | 967926 | 22661560 ~ 22676748 (-) |
| LOC113546904 | LOC108258503 | coding | upstream | 984530 | 22678164 ~ 22696823 (-) |
| cdhr2 | NA | coding | upstream | 1012920 | 22706554 ~ 22729853 (-) |
| G215168 | NA | non-coding | downstream | 47289 | 21645119 ~ 21645894 (-) |
| G214980 | NA | non-coding | downstream | 58319 | 21634658 ~ 21634864 (-) |
| G214978 | rest,LOC106604639 | non-coding | downstream | 61316 | 21628129 ~ 21631867 (-) |
| G214977 | NA | non-coding | downstream | 71262 | 21620678 ~ 21621921 (-) |
| G214976 | NA | non-coding | downstream | 76351 | 21616602 ~ 21616832 (-) |
| G215194 | NA | non-coding | upstream | 29837 | 21723471 ~ 22134451 (-) |
| G215217 | NA | non-coding | upstream | 328452 | 22022086 ~ 22078908 (-) |
| G215171 | NA | non-coding | upstream | 331849 | 22025483 ~ 22082843 (-) |
| G215221 | NA | non-coding | upstream | 386528 | 22080162 ~ 22136007 (-) |
| G215224 | NA | non-coding | upstream | 427822 | 22121456 ~ 22133365 (-) |
| LOC113528016 | thegl | other | downstream | 333993 | 21352281 ~ 21359190 (-) |
| slc16a2 | LOC108279893,LOC107596364 | other | downstream | 420676 | 21236802 ~ 21272507 (-) |
| fgf2 | fgf2,LOC107717315 | other | downstream | 665102 | 21014439 ~ 21028081 (-) |
| spry1 | spry1 | other | downstream | 787912 | 20900057 ~ 20905271 (-) |
| hs3st1 | hs3st1 | other | downstream | 1479554 | 20205339 ~ 20213629 (-) |
| LOC117598877 | NA | other | upstream | 1238 | 21694872 ~ 21695359 (-) |
| G215182 | LOC108275153 | other | upstream | 3026 | 21696660 ~ 22285703 (-) |
| LOC117598964 | NA | other | upstream | 4109 | 21697743 ~ 21698174 (-) |
| LOC117598880 | NA | other | upstream | 5658 | 21699292 ~ 21699794 (-) |
| LOC113546939 | NA | other | upstream | 6356 | 21699990 ~ 21700504 (-) |
