LOC117598898


Basic Information

Item Value
gene id LOC117598898
gene name NA
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 22214544 ~ 22215344 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>LOC117598898
TTCAGCTCAACAACATACCAgcagtttgtgttcatttacagcaacagtaatcattttaattctttgAGATGGGACTAGGCAGAGTTTTGAGTTACTTTACTCTAGCAATGTTCATTCAatATTCCTGCAGTCAGACATTGATCGAGTCTGATTCAGTCATCATCAAACCTGATCAGTCTCATAAACTGACCTGCACAGCATCTGGATTGGACATTAGTGGCTATTACATGGCTTGGATCAGACAGGCTCCTGGAAAAGGACTGGAATTTCTTGCAACTATCTATAGCAGTAGTAGCATATATTACTCCAGTGCAGTTAAAGGCCGCTTCACCATCTCCAGAGACGACAGTAAGCAGCAGGTGTATCTGCACATGAACAGCGTGAGGacagaagacacagctgtgtattactgcgcccGACACACACAATGATACTTCTCCTTAGacatcagtacaaaaacacatgctTGCTATAGTCACAGGACAAGCTCACATTTTCATAAGCAGTGTATTCATGGAGCTCAAAGAACCAAAATGTTTTGACTTTTACTGCATGTGGCTTATTGTGAACATTGTCTGGACATTTATGCTGGTATAAGATTACTTAGGTCAGAGTCagttctgaatatatatatatatatggtacagAGGGtaatgttgccacctcacagcttcagggcccTCGGTTTGATCCTGGTCATA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC117598898 True 701 V_segment 0.41 2 22214544 22215344

Neighbor

gene id symbol gene type direction distance location
LOC117598896 NA coding downstream 520910 21693183 ~ 21693634 (-)
LOC117598776 NA coding downstream 522968 21685697 ~ 21691576 (-)
LOC117598954 NA coding downstream 529899 21684024 ~ 21684645 (-)
LOC117598868 NA coding downstream 537737 21675638 ~ 21676807 (-)
LOC117598919 NA coding downstream 541214 21672822 ~ 21673330 (-)
topaz1 topaz1 coding upstream 337380 22552724 ~ 22582102 (-)
trak1b LOC108275079,LOC108414239,LOC107706145 coding upstream 414537 22629881 ~ 22644263 (-)
LOC113546927 ctnnb1,LOC108256545,LOC108414240,LOC103034575,LOC107710337,LOC107706261,LOC107688361,LOC107654753 coding upstream 446216 22661560 ~ 22676748 (-)
LOC113546904 LOC108258503 coding upstream 462820 22678164 ~ 22696823 (-)
cdhr2 NA coding upstream 491210 22706554 ~ 22729853 (-)
G215228 NA non-coding downstream 17132 22164570 ~ 22197412 (-)
G215172 NA non-coding downstream 74404 22125672 ~ 22140140 (-)
G215221 NA non-coding downstream 78537 22080162 ~ 22136007 (-)
G215224 NA non-coding downstream 81179 22121456 ~ 22133365 (-)
G215171 NA non-coding downstream 131701 22025483 ~ 22082843 (-)
G215249 NA non-coding upstream 175012 22390356 ~ 22397751 (-)
G215262 NA non-coding upstream 230778 22446122 ~ 22543980 (-)
G215269 NA non-coding upstream 259677 22475021 ~ 22507863 (-)
LOC117598972 NA non-coding upstream 262632 22477976 ~ 22480922 (-)
G215507 NA non-coding upstream 518385 22733729 ~ 22734095 (-)
G215183 NA other downstream 2646 21815670 ~ 22211898 (-)
LOC117598917 NA other downstream 2649 22211350 ~ 22211895 (-)
LOC117598963 NA other downstream 241519 21972594 ~ 21973025 (-)
LOC117598858 NA other downstream 244126 21969852 ~ 21970418 (-)
G215188 NA other downstream 244130 21685704 ~ 21970414 (-)
LOC113546935 NA other upstream 398 22215742 ~ 22217034 (-)
LOC117598811 NA other upstream 1964 22217308 ~ 22219064 (-)
LOC117598884 LOC108275153 other upstream 7053 22222397 ~ 22222851 (-)
G215184 NA other upstream 10297 22225641 ~ 22257250 (-)
LOC117598812 NA other upstream 12097 22227441 ~ 22227947 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) G1185539 NA unknown NC_048577.1 CM023231.2 51733649 ~ 51734324 (+)