LOC117598909


Basic Information

Item Value
gene id LOC117598909
gene name NA
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 21962438 ~ 21963007 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>LOC117598909
AGGTTCCACTCAAACCATGTTCTCTACATTTCTACTCCTGCTGTTAACAGCTGCATCTGGAATTAAATGTATTGAACTGGTTCAGCCTGCAGTCATGGTGGTTAAGCCTGAAGAATCATTTTCAGTCCCCTGTAAGATCACTGGATACTCAGCCACAAGTTCCTGTACTAACTGGATACGACATGCATCAGGAAAGGAGTTGGAATGGATGGGCTGGTACTGCAGCTCCAGTAATACTGGCAGCAAAGATTCACTAAAGAACAAGATCCATTTCTCAGCCGAGGCCTCCAGCAACACTGTGATTTTACACGGGCAAAACTTTCAGACTGaggacacagctgtgtattactgcgctcgtgATCCACAGTGAAACAGATCAACAAAGaccctgtacaaaaacacccagtacAGAAGACTGTAAGAGGCAGAAACAAtgttttatctctgttttaACTTCTAAGTTTCTCAGAAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC117598909 True 472 V_segment 0.44 2 21962438 21963007

Neighbor

gene id symbol gene type direction distance location
LOC117598896 NA coding downstream 268804 21693183 ~ 21693634 (-)
LOC117598776 NA coding downstream 270862 21685697 ~ 21691576 (-)
LOC117598954 NA coding downstream 277793 21684024 ~ 21684645 (-)
LOC117598868 NA coding downstream 285631 21675638 ~ 21676807 (-)
LOC117598919 NA coding downstream 289108 21672822 ~ 21673330 (-)
topaz1 topaz1 coding upstream 589717 22552724 ~ 22582102 (-)
trak1b LOC108275079,LOC108414239,LOC107706145 coding upstream 666874 22629881 ~ 22644263 (-)
LOC113546927 ctnnb1,LOC108256545,LOC108414240,LOC103034575,LOC107710337,LOC107706261,LOC107688361,LOC107654753 coding upstream 698553 22661560 ~ 22676748 (-)
LOC113546904 LOC108258503 coding upstream 715157 22678164 ~ 22696823 (-)
cdhr2 NA coding upstream 743547 22706554 ~ 22729853 (-)
G215168 NA non-coding downstream 316544 21645119 ~ 21645894 (-)
G214980 NA non-coding downstream 327574 21634658 ~ 21634864 (-)
G214978 rest,LOC106604639 non-coding downstream 330571 21628129 ~ 21631867 (-)
G214977 NA non-coding downstream 340517 21620678 ~ 21621921 (-)
G214976 NA non-coding downstream 345606 21616602 ~ 21616832 (-)
G215217 NA non-coding upstream 59079 22022086 ~ 22078908 (-)
G215171 NA non-coding upstream 62476 22025483 ~ 22082843 (-)
G215221 NA non-coding upstream 117155 22080162 ~ 22136007 (-)
G215224 NA non-coding upstream 158449 22121456 ~ 22133365 (-)
G215172 NA non-coding upstream 162665 22125672 ~ 22140140 (-)
LOC117595694 NA other downstream 4686 21957298 ~ 21957752 (-)
LOC117598870 NA other downstream 6310 21955300 ~ 21956128 (-)
LOC117595695 NA other downstream 9913 21952036 ~ 21952525 (-)
LOC113546938 NA other downstream 14088 21947731 ~ 21948350 (-)
LOC117598794 NA other downstream 23864 21794381 ~ 21938574 (-)
LOC113546933 NA other upstream 2883 21965890 ~ 21966382 (-)
LOC117598858 NA other upstream 6845 21969852 ~ 21970418 (-)
LOC117598963 NA other upstream 9587 21972594 ~ 21973025 (-)
LOC117598917 NA other upstream 248343 22211350 ~ 22211895 (-)
LOC117598898 NA other upstream 251537 22214544 ~ 22215344 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000288_00050351_00060483 IGHV5-5 misc CI01000288 null 49830 ~ 60786 (+)
eurasian perch (Perca fluviatilis) trnar-ucg_4 NA coding NC_053118.1 CM020915.1 22024 ~ 22096 (-)
tiger barb (Puntius tetrazona) LOC122332140 ighm,ighv5-5,ighv5-4,ighv5-8 coding NC_056701.1 CM032070.1 13086375 ~ 13087267 (-)