LOC117598915


Basic Information

Item Value
gene id LOC117598915
gene name NA
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 22103636 ~ 22104185 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>LOC117598915
acacaccatgttctctacatctctactgctcctgctggcagctgcttcctatgtgcatggtgaggaactgactcagcctgcttccatgacagtccagccaggccagagtctctccatcccctgcaaGGTCTCATATTCAGTTACGAGCTATTATACAGGATGgatccgacaacctgcaggaaaagctctggagtggattggaTACATCAATAGCGATGGGAGTACAtattacagtgacaaactgaaaaacaagttcagcatctccagagacactgctactaacacaataacaattcgaggacagaatctgcaaactgaagacacagctgtgtattactgcgcaagagagtcacagtgacacagaatagtggattccccttacaaaaactttgagaCATGTTAGAGACATCCTCTCAATGCAACTAATAAACcatcttttactttttattcagTGGAA

Function

GO: NA

KEGG:

id description
ko05323 Rheumatoid arthritis
ko05320 Autoimmune thyroid disease
ko05330 Allograft rejection
ko05332 Graft-versus-host disease
ko05416 Viral myocarditis
ko04940 Type I diabetes mellitus

RNA

RNA id representative length rna type GC content exon number start site end site
LOC117598915 True 457 V_segment 0.44 2 22103636 22104185

Neighbor

gene id symbol gene type direction distance location
LOC117598775 NA coding upstream 434754 21668341 ~ 21668882 (+)
LOC117598774 NA coding upstream 437892 21664594 ~ 21665744 (+)
LOC117598848 NA coding upstream 440096 21663095 ~ 21663540 (+)
LOC117599000 NA coding upstream 442597 21660425 ~ 21661039 (+)
LOC117598992 NA coding upstream 444529 21658502 ~ 21659107 (+)
LOC113546929 NA coding downstream 433317 22537502 ~ 22548866 (+)
cckb LOC108274239 coding downstream 510674 22614859 ~ 22621980 (+)
rnf44 rnf44 coding downstream 629550 22733735 ~ 22754432 (+)
pdlim7 pdlim7 coding downstream 677181 22781366 ~ 22825233 (+)
LOC113546949 LOC108277208 coding downstream 1037529 23141714 ~ 23143760 (+)
G215093 NA non-coding upstream 43880 22058344 ~ 22059756 (+)
G215035 NA non-coding upstream 82901 22015818 ~ 22020735 (+)
G215069 NA non-coding upstream 108571 21916419 ~ 21995065 (+)
G215075 NA non-coding upstream 137403 21923978 ~ 21966233 (+)
LOC117598970 NA non-coding upstream 190287 21912612 ~ 21913349 (+)
G215107 NA non-coding downstream 29017 22133202 ~ 22401320 (+)
LOC117598974 NA non-coding downstream 33110 22137295 ~ 22139333 (+)
LOC117598906 NA non-coding downstream 36599 22140784 ~ 22141255 (+)
LOC117598961 NA non-coding downstream 37900 22142085 ~ 22142516 (+)
LOC113546937 NA non-coding downstream 40765 22144950 ~ 22145717 (+)
LOC117598803 NA other upstream 11799 22091363 ~ 22091837 (+)
LOC117598893 NA other upstream 13533 22089637 ~ 22090103 (+)
LOC117598965 LOC108275153 other upstream 16224 22075405 ~ 22087412 (+)
LOC117598802 NA other upstream 18387 22082912 ~ 22085249 (+)
LOC117598856 LOC108275153 other upstream 26808 22076283 ~ 22076828 (+)
LOC117598894 NA other downstream 1603 22105788 ~ 22106309 (+)
LOC117598913 NA other downstream 3419 22107604 ~ 22108104 (+)
LOC117598936 NA other downstream 6193 22110378 ~ 22110821 (+)
LOC117598804 NA other downstream 7746 22111931 ~ 22112785 (+)
LOC117598959 LOC108275153 other downstream 15790 22119975 ~ 22120463 (+)

Expression


Co-expression Network