LOC117598918 (LOC108275153)


Basic Information

Item Value
gene id LOC117598918
gene name LOC108275153
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 21711315 ~ 21711778 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>LOC117598918
cagtacaaacaacacacaccatgttctctacatctctactgctcctgctggcagctgcttcctatgtgcatggtgaggaactgactcagcctgcttccatgacagtccagccaggccagagtctctccatcccctgcaaGGTCTCATATTCAGTTACGAGCTATAGTACAGGTTGgatccgacaacctgcaggaaaagctctggagtggattggaGTCATCTATTACAGTGGGAGTACAtattacagtgacaaactgaaaaacaagttcagcatctccagagacactgctactaacacaataacaattcgaggacagaatctgcaaactgaagacacagctgtgtattactgcgcaggagactcacagtga

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC117598918 True 371 V_segment 0.47 2 21711315 21711778

Neighbor

gene id symbol gene type direction distance location
LOC117598775 NA coding upstream 42433 21668341 ~ 21668882 (+)
LOC117598774 NA coding upstream 45571 21664594 ~ 21665744 (+)
LOC117598848 NA coding upstream 47775 21663095 ~ 21663540 (+)
LOC117599000 NA coding upstream 50276 21660425 ~ 21661039 (+)
LOC117598992 NA coding upstream 52208 21658502 ~ 21659107 (+)
LOC113546929 NA coding downstream 825724 22537502 ~ 22548866 (+)
cckb LOC108274239 coding downstream 903081 22614859 ~ 22621980 (+)
rnf44 rnf44 coding downstream 1021957 22733735 ~ 22754432 (+)
pdlim7 pdlim7 coding downstream 1069588 22781366 ~ 22825233 (+)
LOC113546949 LOC108277208 coding downstream 1429936 23141714 ~ 23143760 (+)
G215042 NA non-coding upstream 54480 21656261 ~ 21656835 (+)
G214829 NA non-coding upstream 76241 21634851 ~ 21635074 (+)
G214825 NA non-coding upstream 94021 21617095 ~ 21617294 (+)
G214747 LOC108280967 non-coding upstream 154914 21551549 ~ 21556401 (+)
LOC117598827 LOC108280967,LOC108277545,LOC108277574 non-coding upstream 205529 21502137 ~ 21505786 (+)
G215055 NA non-coding downstream 5914 21717692 ~ 21718076 (+)
G215059 NA non-coding downstream 12833 21724611 ~ 22137078 (+)
G215064 NA non-coding downstream 62445 21774223 ~ 21807343 (+)
LOC117598973 NA non-coding downstream 176253 21888031 ~ 21888800 (+)
LOC117598789 NA non-coding downstream 179820 21891598 ~ 21892131 (+)
G215015 LOC108275153 other upstream 62163 21646080 ~ 21649152 (+)
LOC113540569 LOC108280981,LOC108280985,LOC108277545,LOC108277574,LOC108280967 other upstream 145939 21514573 ~ 21565376 (+)
LOC113540568 LOC108280981,LOC108280985,LOC108277574,LOC108277545,LOC108280967 other upstream 198275 21482022 ~ 21513040 (+)
hopx hopx other upstream 362229 21340416 ~ 21349086 (+)
nudt6 nudt6 other upstream 687228 21011774 ~ 21024087 (+)
LOC117598875 NA other downstream 2151 21713929 ~ 21714624 (+)
LOC117598966 NA other downstream 8855 21720633 ~ 21721061 (+)
LOC117598855 NA other downstream 14684 21726462 ~ 21727321 (+)
LOC117598777 NA other downstream 18625 21730403 ~ 21731069 (+)
LOC117598939 NA other downstream 111891 21823669 ~ 21824112 (+)

Expression


Co-expression Network