LOC117598928 (LOC108275153)


Basic Information

Item Value
gene id LOC117598928
gene name LOC108275153
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 21855729 ~ 21856436 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>LOC117598928
gtctctTTGGAGAAGTTGGAGaactttggagaacagagaagaccccagtacaaacaacacacaccatgttctctacatctctactgctcctgctggcagctgcttcctatgtgcatggtgtggaactgactcagcctgcttccatgacagtccagccaggccagagtctctccatcccctgcaaGGTTTCATATTCACTTACGATCTATGATACAGCTTGgatccgacaacctgcaggaaaagctctggagtggattggaTACATCGACAGTGATGGGGATACAGCTTatagtgacaaactgaaaaacaagttcagcatctccagagacactgctactaacacaataacaattcgaggacagaatctgcaaactgaagacacagctgtgtattactgcgcaagagagtcacagtgacacagaatagtggattccccttacaaaaactatgagacatgttagagacatcctctcaatgccactaataaaccatcttttactttttatcctGTGGAATGAAGTTTTAATAGTTTCTGTcacttttaaacacacaaacagttgattttaaattaaaaagtaactTCTTTTAAAGAGTGTTCTTTTTGAACCATTATTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC117598928 True 615 V_segment 0.41 2 21855729 21856436

Neighbor

gene id symbol gene type direction distance location
LOC117598775 NA coding upstream 186847 21668341 ~ 21668882 (+)
LOC117598774 NA coding upstream 189985 21664594 ~ 21665744 (+)
LOC117598848 NA coding upstream 192189 21663095 ~ 21663540 (+)
LOC117599000 NA coding upstream 194690 21660425 ~ 21661039 (+)
LOC117598992 NA coding upstream 196622 21658502 ~ 21659107 (+)
LOC113546929 NA coding downstream 681066 22537502 ~ 22548866 (+)
cckb LOC108274239 coding downstream 758423 22614859 ~ 22621980 (+)
rnf44 rnf44 coding downstream 877299 22733735 ~ 22754432 (+)
pdlim7 pdlim7 coding downstream 924930 22781366 ~ 22825233 (+)
LOC113546949 LOC108277208 coding downstream 1285278 23141714 ~ 23143760 (+)
G215064 NA non-coding upstream 48386 21774223 ~ 21807343 (+)
G215055 NA non-coding upstream 137653 21717692 ~ 21718076 (+)
G215042 NA non-coding upstream 198894 21656261 ~ 21656835 (+)
G214829 NA non-coding upstream 220655 21634851 ~ 21635074 (+)
G214825 NA non-coding upstream 238435 21617095 ~ 21617294 (+)
LOC117598973 NA non-coding downstream 31595 21888031 ~ 21888800 (+)
LOC117598789 NA non-coding downstream 35162 21891598 ~ 21892131 (+)
LOC117598900 NA non-coding downstream 36733 21893169 ~ 21894161 (+)
LOC117598962 NA non-coding downstream 42472 21898908 ~ 21899339 (+)
LOC117598935 NA non-coding downstream 53217 21909653 ~ 21910096 (+)
LOC117598853 NA other upstream 1969 21837463 ~ 21853760 (+)
LOC117598872 NA other upstream 5675 21849256 ~ 21850054 (+)
LOC117598851 NA other upstream 7722 21847358 ~ 21848007 (+)
LOC117598912 NA other upstream 10400 21844846 ~ 21845329 (+)
LOC117598953 NA other upstream 15833 21831765 ~ 21839896 (+)
LOC117598957 NA other downstream 7551 21863987 ~ 21864616 (+)
LOC117598937 NA other downstream 15566 21872002 ~ 21872445 (+)
G215013 NA other downstream 17703 21874139 ~ 21884513 (+)
LOC117598892 NA other downstream 17717 21874153 ~ 21874615 (+)
LOC117598885 NA other downstream 27533 21883969 ~ 21884423 (+)

Expression


Co-expression Network