Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC117598930 |
| gene name | NA |
| gene type | misc |
| species | striped catfish (Pangasianodon hypophthalmus) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_047607.1 |
| NCBI id | CM018553.1 |
| chromosome length | 26458119 |
| location | 22246772 ~ 22247215 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| LOC117598930 | True | 351 | V_segment | 0.46 | 2 | 22246772 | 22247215 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC117598896 | NA | coding | downstream | 553138 | 21693183 ~ 21693634 (-) |
| LOC117598776 | NA | coding | downstream | 555196 | 21685697 ~ 21691576 (-) |
| LOC117598954 | NA | coding | downstream | 562127 | 21684024 ~ 21684645 (-) |
| LOC117598868 | NA | coding | downstream | 569965 | 21675638 ~ 21676807 (-) |
| LOC117598919 | NA | coding | downstream | 573442 | 21672822 ~ 21673330 (-) |
| topaz1 | topaz1 | coding | upstream | 305509 | 22552724 ~ 22582102 (-) |
| trak1b | LOC108275079,LOC108414239,LOC107706145 | coding | upstream | 382666 | 22629881 ~ 22644263 (-) |
| LOC113546927 | ctnnb1,LOC108256545,LOC108414240,LOC103034575,LOC107710337,LOC107706261,LOC107688361,LOC107654753 | coding | upstream | 414345 | 22661560 ~ 22676748 (-) |
| LOC113546904 | LOC108258503 | coding | upstream | 430949 | 22678164 ~ 22696823 (-) |
| cdhr2 | NA | coding | upstream | 459339 | 22706554 ~ 22729853 (-) |
| G215228 | NA | non-coding | downstream | 49360 | 22164570 ~ 22197412 (-) |
| G215172 | NA | non-coding | downstream | 106632 | 22125672 ~ 22140140 (-) |
| G215221 | NA | non-coding | downstream | 110765 | 22080162 ~ 22136007 (-) |
| G215224 | NA | non-coding | downstream | 113407 | 22121456 ~ 22133365 (-) |
| G215171 | NA | non-coding | downstream | 163929 | 22025483 ~ 22082843 (-) |
| G215249 | NA | non-coding | upstream | 143141 | 22390356 ~ 22397751 (-) |
| G215262 | NA | non-coding | upstream | 198907 | 22446122 ~ 22543980 (-) |
| G215269 | NA | non-coding | upstream | 227806 | 22475021 ~ 22507863 (-) |
| LOC117598972 | NA | non-coding | upstream | 230761 | 22477976 ~ 22480922 (-) |
| G215507 | NA | non-coding | upstream | 486514 | 22733729 ~ 22734095 (-) |
| LOC117598897 | NA | other | downstream | 2186 | 22244064 ~ 22244586 (-) |
| LOC117598902 | NA | other | downstream | 5823 | 22240497 ~ 22240949 (-) |
| LOC117598907 | NA | other | downstream | 14304 | 22231972 ~ 22232468 (-) |
| LOC117598926 | NA | other | downstream | 16170 | 22230158 ~ 22230602 (-) |
| LOC117598812 | NA | other | downstream | 18825 | 22227441 ~ 22227947 (-) |
| LOC117598908 | NA | other | upstream | 2875 | 22250090 ~ 22250613 (-) |
| G215235 | NA | other | upstream | 3716 | 22250931 ~ 22272210 (-) |
| LOC117598967 | NA | other | upstream | 7218 | 22254433 ~ 22254852 (-) |
| LOC117598923 | LOC108275153 | other | upstream | 13785 | 22261000 ~ 22261463 (-) |
| LOC117598886 | NA | other | upstream | 17444 | 22264659 ~ 22265110 (-) |
