Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC117598933 |
| gene name | LOC108275153 |
| gene type | misc |
| species | striped catfish (Pangasianodon hypophthalmus) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_047607.1 |
| NCBI id | CM018553.1 |
| chromosome length | 26458119 |
| location | 22198939 ~ 22206286 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| LOC117598933 | False | 351 | V_segment | 0.48 | 2 | 22198972 | 22199415 |
| TU254588 | True | 378 | TUCP | 0.47 | 2 | 22198939 | 22206286 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC117598775 | NA | coding | upstream | 530057 | 21668341 ~ 21668882 (+) |
| LOC117598774 | NA | coding | upstream | 533195 | 21664594 ~ 21665744 (+) |
| LOC117598848 | NA | coding | upstream | 535399 | 21663095 ~ 21663540 (+) |
| LOC117599000 | NA | coding | upstream | 537900 | 21660425 ~ 21661039 (+) |
| LOC117598992 | NA | coding | upstream | 539832 | 21658502 ~ 21659107 (+) |
| LOC113546929 | NA | coding | downstream | 331216 | 22537502 ~ 22548866 (+) |
| cckb | LOC108274239 | coding | downstream | 408573 | 22614859 ~ 22621980 (+) |
| rnf44 | rnf44 | coding | downstream | 527449 | 22733735 ~ 22754432 (+) |
| pdlim7 | pdlim7 | coding | downstream | 575080 | 22781366 ~ 22825233 (+) |
| LOC113546949 | LOC108277208 | coding | downstream | 935428 | 23141714 ~ 23143760 (+) |
| LOC117598808 | NA | non-coding | upstream | 5356 | 22193074 ~ 22193583 (+) |
| LOC117598807 | NA | non-coding | upstream | 14955 | 22183539 ~ 22183984 (+) |
| LOC117598956 | NA | non-coding | upstream | 17245 | 22181064 ~ 22181694 (+) |
| LOC117598859 | NA | non-coding | upstream | 18827 | 22179544 ~ 22180112 (+) |
| LOC117598949 | NA | non-coding | upstream | 25159 | 22173243 ~ 22173780 (+) |
| G215127 | NA | non-coding | downstream | 54605 | 22260891 ~ 22282993 (+) |
| G215149 | NA | non-coding | downstream | 133935 | 22340221 ~ 22343637 (+) |
| G215153 | NA | non-coding | downstream | 195664 | 22401950 ~ 22405524 (+) |
| LOC117598850 | NA | non-coding | downstream | 288922 | 22495208 ~ 22535776 (+) |
| LOC117595678 | NA | non-coding | downstream | 294597 | 22500883 ~ 22501370 (+) |
| LOC117598809 | NA | other | upstream | 1345 | 22197088 ~ 22197594 (+) |
| LOC117598950 | NA | other | upstream | 3665 | 22194751 ~ 22195274 (+) |
| G215012 | LOC108275153 | other | upstream | 14957 | 22141998 ~ 22183982 (+) |
| G215036 | LOC108275153 | other | upstream | 22018 | 22176467 ~ 22176921 (+) |
| LOC117598947 | NA | other | upstream | 67757 | 22126928 ~ 22131182 (+) |
| LOC117598854 | NA | other | downstream | 2421 | 22208707 ~ 22209325 (+) |
| LOC117598895 | NA | other | downstream | 165985 | 22372271 ~ 22373023 (+) |
| LOC117598952 | NA | other | downstream | 168708 | 22374994 ~ 22375530 (+) |
| LOC117598879 | NA | other | downstream | 171004 | 22377290 ~ 22377847 (+) |
| LOC117598924 | NA | other | downstream | 172957 | 22379243 ~ 22379686 (+) |
