Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC117598934 |
| gene name | NA |
| gene type | misc |
| species | striped catfish (Pangasianodon hypophthalmus) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_047607.1 |
| NCBI id | CM018553.1 |
| chromosome length | 26458119 |
| location | 21885135 ~ 21885578 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| id | name | namespace |
|---|---|---|
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds | molecular_function |
| GO:0016798 | hydrolase activity, acting on glycosyl bonds | molecular_function |
| GO:0061783 | peptidoglycan muralytic activity | molecular_function |
| GO:0003796 | lysozyme activity | molecular_function |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| LOC117598934 | True | 351 | V_segment | 0.48 | 2 | 21885135 | 21885578 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC117598775 | NA | coding | upstream | 216253 | 21668341 ~ 21668882 (+) |
| LOC117598774 | NA | coding | upstream | 219391 | 21664594 ~ 21665744 (+) |
| LOC117598848 | NA | coding | upstream | 221595 | 21663095 ~ 21663540 (+) |
| LOC117599000 | NA | coding | upstream | 224096 | 21660425 ~ 21661039 (+) |
| LOC117598992 | NA | coding | upstream | 226028 | 21658502 ~ 21659107 (+) |
| LOC113546929 | NA | coding | downstream | 651924 | 22537502 ~ 22548866 (+) |
| cckb | LOC108274239 | coding | downstream | 729281 | 22614859 ~ 22621980 (+) |
| rnf44 | rnf44 | coding | downstream | 848157 | 22733735 ~ 22754432 (+) |
| pdlim7 | pdlim7 | coding | downstream | 895788 | 22781366 ~ 22825233 (+) |
| LOC113546949 | LOC108277208 | coding | downstream | 1256136 | 23141714 ~ 23143760 (+) |
| G215064 | NA | non-coding | upstream | 77792 | 21774223 ~ 21807343 (+) |
| G215055 | NA | non-coding | upstream | 167059 | 21717692 ~ 21718076 (+) |
| G215042 | NA | non-coding | upstream | 228300 | 21656261 ~ 21656835 (+) |
| G214829 | NA | non-coding | upstream | 250061 | 21634851 ~ 21635074 (+) |
| G214825 | NA | non-coding | upstream | 267841 | 21617095 ~ 21617294 (+) |
| LOC117598973 | NA | non-coding | downstream | 2453 | 21888031 ~ 21888800 (+) |
| LOC117598789 | NA | non-coding | downstream | 6020 | 21891598 ~ 21892131 (+) |
| LOC117598900 | NA | non-coding | downstream | 7591 | 21893169 ~ 21894161 (+) |
| LOC117598962 | NA | non-coding | downstream | 13330 | 21898908 ~ 21899339 (+) |
| LOC117598935 | NA | non-coding | downstream | 24075 | 21909653 ~ 21910096 (+) |
| G215013 | NA | other | upstream | 622 | 21874139 ~ 21884513 (+) |
| LOC117598885 | NA | other | upstream | 712 | 21883969 ~ 21884423 (+) |
| LOC117598892 | NA | other | upstream | 10520 | 21874153 ~ 21874615 (+) |
| LOC117598937 | NA | other | upstream | 12690 | 21872002 ~ 21872445 (+) |
| LOC117598957 | NA | other | upstream | 20519 | 21863987 ~ 21864616 (+) |
| LOC117598788 | NA | other | downstream | 1098 | 21886676 ~ 21887424 (+) |
| G215072 | NA | other | downstream | 2453 | 21888031 ~ 22113953 (+) |
| LOC117598791 | LOC108275153 | other | downstream | 34346 | 21919924 ~ 21977381 (+) |
| LOC117598968 | NA | other | downstream | 91382 | 21976960 ~ 21979634 (+) |
| LOC117598891 | NA | other | downstream | 95375 | 21980953 ~ 21981815 (+) |
