LOC117598936


Basic Information

Item Value
gene id LOC117598936
gene name NA
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 22110378 ~ 22110821 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>LOC117598936
atgttctctacatctctactgctcctgctggcagctgcttcctatgtgcatggtgaggaactgactcagcctgcttccatgacagtccagccaggccagagtctctccatcccctgcaaggtttcatattcagttacgagCTATTATACAGGTTGgatccgacaacctgcaggaaaagctctggagtggattggaTACATCCAAAGTGGTGGGAGTACAtattacagtgacaaactgaaaaacaagttcagcatctccagagacactgctactaacacaataacaattcgaggacagaatctgcaaactgaagacacagctgtgtattactgcgcaagagagtcacagtga

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC117598936 True 351 V_segment 0.47 2 22110378 22110821

Neighbor

gene id symbol gene type direction distance location
LOC117598775 NA coding upstream 441496 21668341 ~ 21668882 (+)
LOC117598774 NA coding upstream 444634 21664594 ~ 21665744 (+)
LOC117598848 NA coding upstream 446838 21663095 ~ 21663540 (+)
LOC117599000 NA coding upstream 449339 21660425 ~ 21661039 (+)
LOC117598992 NA coding upstream 451271 21658502 ~ 21659107 (+)
LOC113546929 NA coding downstream 426681 22537502 ~ 22548866 (+)
cckb LOC108274239 coding downstream 504038 22614859 ~ 22621980 (+)
rnf44 rnf44 coding downstream 622914 22733735 ~ 22754432 (+)
pdlim7 pdlim7 coding downstream 670545 22781366 ~ 22825233 (+)
LOC113546949 LOC108277208 coding downstream 1030893 23141714 ~ 23143760 (+)
G215093 NA non-coding upstream 50622 22058344 ~ 22059756 (+)
G215035 NA non-coding upstream 89643 22015818 ~ 22020735 (+)
G215069 NA non-coding upstream 115313 21916419 ~ 21995065 (+)
G215075 NA non-coding upstream 144145 21923978 ~ 21966233 (+)
LOC117598970 NA non-coding upstream 197029 21912612 ~ 21913349 (+)
G215107 NA non-coding downstream 22381 22133202 ~ 22401320 (+)
LOC117598974 NA non-coding downstream 26474 22137295 ~ 22139333 (+)
LOC117598906 NA non-coding downstream 29963 22140784 ~ 22141255 (+)
LOC117598961 NA non-coding downstream 31264 22142085 ~ 22142516 (+)
LOC113546937 NA non-coding downstream 34129 22144950 ~ 22145717 (+)
LOC117598913 NA other upstream 2274 22107604 ~ 22108104 (+)
LOC117598894 NA other upstream 4069 22105788 ~ 22106309 (+)
LOC117598915 NA other upstream 6193 22103636 ~ 22104185 (+)
LOC117598803 NA other upstream 18541 22091363 ~ 22091837 (+)
LOC117598893 NA other upstream 20275 22089637 ~ 22090103 (+)
LOC117598804 NA other downstream 1110 22111931 ~ 22112785 (+)
LOC117598959 LOC108275153 other downstream 9154 22119975 ~ 22120463 (+)
LOC117598947 NA other downstream 16107 22126928 ~ 22131182 (+)
G215012 LOC108275153 other downstream 31177 22141998 ~ 22183982 (+)
G215027 NA other downstream 56021 22166842 ~ 22203806 (+)

Expression


Co-expression Network