LOC117598938


Basic Information

Item Value
gene id LOC117598938
gene name NA
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 22015723 ~ 22016166 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>LOC117598938
atgttctctacatctctactgctcctgctggcagctgcttcctatgtgcatggtgaggaactgactcagcctgcttccatgacagtccagccaggccagagtctctccatcccctgcaaggtttcatattcagttactaGCTATAATACAGGTTGgatccgacaacctgcaggaaaagctctggagtggattggaGCTATCTATAGCAGTGGGAGTACAGcttacagtgacaaactgaaaaacaagttcagcatctccagagacactgctactaacacaataacaattcgaggacagaatctgcaaactgaagacacagctgtgtattactgcgcaagagagtcacagtga

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC117598938 True 351 V_segment 0.47 2 22015723 22016166

Neighbor

gene id symbol gene type direction distance location
LOC117598775 NA coding upstream 346841 21668341 ~ 21668882 (+)
LOC117598774 NA coding upstream 349979 21664594 ~ 21665744 (+)
LOC117598848 NA coding upstream 352183 21663095 ~ 21663540 (+)
LOC117599000 NA coding upstream 354684 21660425 ~ 21661039 (+)
LOC117598992 NA coding upstream 356616 21658502 ~ 21659107 (+)
LOC113546929 NA coding downstream 521336 22537502 ~ 22548866 (+)
cckb LOC108274239 coding downstream 598693 22614859 ~ 22621980 (+)
rnf44 rnf44 coding downstream 717569 22733735 ~ 22754432 (+)
pdlim7 pdlim7 coding downstream 765200 22781366 ~ 22825233 (+)
LOC113546949 LOC108277208 coding downstream 1125548 23141714 ~ 23143760 (+)
G215069 NA non-coding upstream 20658 21916419 ~ 21995065 (+)
G215075 NA non-coding upstream 49490 21923978 ~ 21966233 (+)
LOC117598970 NA non-coding upstream 102374 21912612 ~ 21913349 (+)
LOC117598790 NA non-coding upstream 103904 21911288 ~ 21911819 (+)
LOC117598935 NA non-coding upstream 105627 21909653 ~ 21910096 (+)
G215093 NA non-coding downstream 42178 22058344 ~ 22059756 (+)
G215095 NA non-coding downstream 61324 22077490 ~ 22133009 (+)
G215107 NA non-coding downstream 117036 22133202 ~ 22401320 (+)
LOC117598974 NA non-coding downstream 121129 22137295 ~ 22139333 (+)
LOC117598906 NA non-coding downstream 124618 22140784 ~ 22141255 (+)
LOC117598878 NA other upstream 1116 22014103 ~ 22014607 (+)
LOC117598887 NA other upstream 6424 22008490 ~ 22009299 (+)
LOC117598797 NA other upstream 10140 22004952 ~ 22005583 (+)
LOC117598796 NA other upstream 11776 22003426 ~ 22003947 (+)
LOC117598881 NA other upstream 14933 22000286 ~ 22000790 (+)
LOC117598941 NA other downstream 3639 22019805 ~ 22020248 (+)
LOC117598798 NA other downstream 10548 22026714 ~ 22031629 (+)
LOC117598799 NA other downstream 19512 22035678 ~ 22037246 (+)
LOC117598942 NA other downstream 21169 22037335 ~ 22037911 (+)
G214998 LOC108275153 other downstream 23486 22039652 ~ 22064997 (+)

Expression


Co-expression Network