LOC117598940


Basic Information

Item Value
gene id LOC117598940
gene name NA
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 22397112 ~ 22397570 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>LOC117598940
atgttctctacatctctactgctcctgctggcagctgcttcctatgtgcatggttatgaactgactcagcctgcttccatgacagtccagccaggccagagtctctccatcccctgcaaggtttcatattcagttacaagCCATCATACAGCTTGgatccgacaacctgcaggaaaagctctggagtttATTGGATACATCCATAGTGGTGGGAGTACAtattacagtgacaaactgaaaaacaagttcagcatctccagagacactgctactaacacaataacaattcgaggacagaatctgcaaactgaagacacagctgtgtattactgcgcaagaggagcacagtgacacagaatagtggat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC117598940 True 366 V_segment 0.46 2 22397112 22397570

Neighbor

gene id symbol gene type direction distance location
LOC117598775 NA coding upstream 728230 21668341 ~ 21668882 (+)
LOC117598774 NA coding upstream 731368 21664594 ~ 21665744 (+)
LOC117598848 NA coding upstream 733572 21663095 ~ 21663540 (+)
LOC117599000 NA coding upstream 736073 21660425 ~ 21661039 (+)
LOC117598992 NA coding upstream 738005 21658502 ~ 21659107 (+)
LOC113546929 NA coding downstream 139932 22537502 ~ 22548866 (+)
cckb LOC108274239 coding downstream 217289 22614859 ~ 22621980 (+)
rnf44 rnf44 coding downstream 336165 22733735 ~ 22754432 (+)
pdlim7 pdlim7 coding downstream 383796 22781366 ~ 22825233 (+)
LOC113546949 LOC108277208 coding downstream 744144 23141714 ~ 23143760 (+)
G215149 NA non-coding upstream 53475 22340221 ~ 22343637 (+)
G215127 NA non-coding upstream 114119 22260891 ~ 22282993 (+)
LOC117598808 NA non-coding upstream 203529 22193074 ~ 22193583 (+)
LOC117598807 NA non-coding upstream 213128 22183539 ~ 22183984 (+)
LOC117598956 NA non-coding upstream 215418 22181064 ~ 22181694 (+)
G215153 NA non-coding downstream 4380 22401950 ~ 22405524 (+)
LOC117598850 NA non-coding downstream 97638 22495208 ~ 22535776 (+)
LOC117595678 NA non-coding downstream 103313 22500883 ~ 22501370 (+)
G215294 NA non-coding downstream 327117 22724687 ~ 22726646 (+)
G215336 NA non-coding downstream 338201 22735771 ~ 22735986 (+)
LOC117598922 LOC108275153 other upstream 6290 22390359 ~ 22390822 (+)
LOC117598883 NA other upstream 8963 22387697 ~ 22388149 (+)
LOC117598944 NA other upstream 14787 22381888 ~ 22382325 (+)
LOC117598924 NA other upstream 17426 22379243 ~ 22379686 (+)
LOC117598879 NA other upstream 19265 22377290 ~ 22377847 (+)
LOC113546930 LOC108275153 other downstream 65530 22463100 ~ 22490911 (+)
LOC113546936 NA other downstream 72609 22470179 ~ 22470678 (+)
higd2a higd2a other downstream 368244 22765814 ~ 22769636 (+)
trnat-cgu_7 NA other downstream 382716 22780286 ~ 22780576 (+)
G215347 NA other downstream 438094 22835664 ~ 22835902 (+)

Expression


Co-expression Network