Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC117598944 |
| gene name | NA |
| gene type | misc |
| species | striped catfish (Pangasianodon hypophthalmus) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_047607.1 |
| NCBI id | CM018553.1 |
| chromosome length | 26458119 |
| location | 22381888 ~ 22382325 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| LOC117598944 | True | 349 | V_segment | 0.48 | 2 | 22381888 | 22382325 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC117598775 | NA | coding | upstream | 713006 | 21668341 ~ 21668882 (+) |
| LOC117598774 | NA | coding | upstream | 716144 | 21664594 ~ 21665744 (+) |
| LOC117598848 | NA | coding | upstream | 718348 | 21663095 ~ 21663540 (+) |
| LOC117599000 | NA | coding | upstream | 720849 | 21660425 ~ 21661039 (+) |
| LOC117598992 | NA | coding | upstream | 722781 | 21658502 ~ 21659107 (+) |
| LOC113546929 | NA | coding | downstream | 155177 | 22537502 ~ 22548866 (+) |
| cckb | LOC108274239 | coding | downstream | 232534 | 22614859 ~ 22621980 (+) |
| rnf44 | rnf44 | coding | downstream | 351410 | 22733735 ~ 22754432 (+) |
| pdlim7 | pdlim7 | coding | downstream | 399041 | 22781366 ~ 22825233 (+) |
| LOC113546949 | LOC108277208 | coding | downstream | 759389 | 23141714 ~ 23143760 (+) |
| G215149 | NA | non-coding | upstream | 38251 | 22340221 ~ 22343637 (+) |
| G215127 | NA | non-coding | upstream | 98895 | 22260891 ~ 22282993 (+) |
| LOC117598808 | NA | non-coding | upstream | 188305 | 22193074 ~ 22193583 (+) |
| LOC117598807 | NA | non-coding | upstream | 197904 | 22183539 ~ 22183984 (+) |
| LOC117598956 | NA | non-coding | upstream | 200194 | 22181064 ~ 22181694 (+) |
| G215153 | NA | non-coding | downstream | 19625 | 22401950 ~ 22405524 (+) |
| LOC117598850 | NA | non-coding | downstream | 112883 | 22495208 ~ 22535776 (+) |
| LOC117595678 | NA | non-coding | downstream | 118558 | 22500883 ~ 22501370 (+) |
| G215294 | NA | non-coding | downstream | 342362 | 22724687 ~ 22726646 (+) |
| G215336 | NA | non-coding | downstream | 353446 | 22735771 ~ 22735986 (+) |
| LOC117598924 | NA | other | upstream | 2202 | 22379243 ~ 22379686 (+) |
| LOC117598879 | NA | other | upstream | 4041 | 22377290 ~ 22377847 (+) |
| LOC117598952 | NA | other | upstream | 6358 | 22374994 ~ 22375530 (+) |
| LOC117598895 | NA | other | upstream | 8865 | 22372271 ~ 22373023 (+) |
| LOC117598854 | NA | other | upstream | 172563 | 22208707 ~ 22209325 (+) |
| LOC117598883 | NA | other | downstream | 5372 | 22387697 ~ 22388149 (+) |
| LOC117598922 | LOC108275153 | other | downstream | 8034 | 22390359 ~ 22390822 (+) |
| LOC117598940 | NA | other | downstream | 14787 | 22397112 ~ 22397570 (+) |
| LOC113546930 | LOC108275153 | other | downstream | 80775 | 22463100 ~ 22490911 (+) |
| LOC113546936 | NA | other | downstream | 87854 | 22470179 ~ 22470678 (+) |
