Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC117598947 |
| gene name | NA |
| gene type | misc |
| species | striped catfish (Pangasianodon hypophthalmus) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_047607.1 |
| NCBI id | CM018553.1 |
| chromosome length | 26458119 |
| location | 22126928 ~ 22131182 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| id | name | namespace |
|---|---|---|
| GO:0061783 | peptidoglycan muralytic activity | molecular_function |
| GO:0003796 | lysozyme activity | molecular_function |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| LOC117598947 | False | 349 | V_segment | 0.48 | 2 | 22126937 | 22131176 |
| TU254585 | True | 364 | TUCP | 0.48 | 2 | 22126928 | 22131182 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC117598775 | NA | coding | upstream | 458046 | 21668341 ~ 21668882 (+) |
| LOC117598774 | NA | coding | upstream | 461184 | 21664594 ~ 21665744 (+) |
| LOC117598848 | NA | coding | upstream | 463388 | 21663095 ~ 21663540 (+) |
| LOC117599000 | NA | coding | upstream | 465889 | 21660425 ~ 21661039 (+) |
| LOC117598992 | NA | coding | upstream | 467821 | 21658502 ~ 21659107 (+) |
| LOC113546929 | NA | coding | downstream | 406320 | 22537502 ~ 22548866 (+) |
| cckb | LOC108274239 | coding | downstream | 483677 | 22614859 ~ 22621980 (+) |
| rnf44 | rnf44 | coding | downstream | 602553 | 22733735 ~ 22754432 (+) |
| pdlim7 | pdlim7 | coding | downstream | 650184 | 22781366 ~ 22825233 (+) |
| LOC113546949 | LOC108277208 | coding | downstream | 1010532 | 23141714 ~ 23143760 (+) |
| G215093 | NA | non-coding | upstream | 67172 | 22058344 ~ 22059756 (+) |
| G215035 | NA | non-coding | upstream | 106193 | 22015818 ~ 22020735 (+) |
| G215069 | NA | non-coding | upstream | 131863 | 21916419 ~ 21995065 (+) |
| G215075 | NA | non-coding | upstream | 160695 | 21923978 ~ 21966233 (+) |
| LOC117598970 | NA | non-coding | upstream | 213579 | 21912612 ~ 21913349 (+) |
| G215107 | NA | non-coding | downstream | 2020 | 22133202 ~ 22401320 (+) |
| LOC117598974 | NA | non-coding | downstream | 6113 | 22137295 ~ 22139333 (+) |
| LOC117598906 | NA | non-coding | downstream | 9602 | 22140784 ~ 22141255 (+) |
| LOC117598961 | NA | non-coding | downstream | 10903 | 22142085 ~ 22142516 (+) |
| LOC113546937 | NA | non-coding | downstream | 13768 | 22144950 ~ 22145717 (+) |
| LOC117598959 | LOC108275153 | other | upstream | 6465 | 22119975 ~ 22120463 (+) |
| G215072 | NA | other | upstream | 12975 | 21888031 ~ 22113953 (+) |
| LOC117598804 | NA | other | upstream | 14143 | 22111931 ~ 22112785 (+) |
| LOC117598936 | NA | other | upstream | 16107 | 22110378 ~ 22110821 (+) |
| G215005 | LOC108275153 | other | upstream | 16118 | 22076246 ~ 22110810 (+) |
| G215012 | LOC108275153 | other | downstream | 10816 | 22141998 ~ 22183982 (+) |
| G215027 | NA | other | downstream | 35660 | 22166842 ~ 22203806 (+) |
| G215036 | LOC108275153 | other | downstream | 45285 | 22176467 ~ 22176921 (+) |
| LOC117598950 | NA | other | downstream | 63569 | 22194751 ~ 22195274 (+) |
| LOC117598809 | NA | other | downstream | 65906 | 22197088 ~ 22197594 (+) |
