LOC117598953


Basic Information

Item Value
gene id LOC117598953
gene name NA
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 21831765 ~ 21839896 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>LOC117598953
CTTCTCATTAGTCCTCCttcaacacaaacatgtttgcttcagctccactgctgctgctggctctCGCCCCCTatGTGTTCTGTGCTACTGAGCTCATCCAGCCAGACTCAGTGCTTATAAAGCCAGGAGAGACTTTAACCATCACCTGTAGAGTGTCTGGAGCTTCTATCACTGATAGCAGCCACTATGGAACAGCTTGGAttcgacaacctgcaggaaaagctctggagtggatcaatttaatttactataatGGGGAGATTCGTCAGAAAGATTCCCTTAAAAACAAGTTTGTCGTCTCTCGAGACACTTCCAGTAACACCGTGACCTTACGGGGACAGaacatgcagactgaagacacagctgtgtat
>TU254641
CATTAGTCCTCCttcaacacaaacatgtttgcttcagctccactgctgctgctggctctCGCCCCCTatGTGTTCTGTGCTACTGAGCTCATCCAGCCAGACTCAGTGCTTATAAAGCCAGGAGAGACTTTAACCATCACCTGTAGAGTGTCTGGAGCTTCTATCACTGATAGCAGCAGCCACTATGGAACAGCTTGGAttcgacaacctgcaggaaaaactCTGGAATGGATCAATTTAATTTACTATGATGGGGATATTGCTAAGAAAGAATCACTTAAAGACAAGTTTGTCATCTCTCGAGACACTTCCAGTAACAGTGTGACCTTACGGGGACAGaacatgcagactgaagacacagctgtgtattactgcgctcg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC117598953 False 371 V_segment 0.47 2 21831765 21832218
TU254641 True 380 TUCP 0.46 3 21831770 21839896

Neighbor

gene id symbol gene type direction distance location
LOC117598775 NA coding upstream 162883 21668341 ~ 21668882 (+)
LOC117598774 NA coding upstream 166021 21664594 ~ 21665744 (+)
LOC117598848 NA coding upstream 168225 21663095 ~ 21663540 (+)
LOC117599000 NA coding upstream 170726 21660425 ~ 21661039 (+)
LOC117598992 NA coding upstream 172658 21658502 ~ 21659107 (+)
LOC113546929 NA coding downstream 697606 22537502 ~ 22548866 (+)
cckb LOC108274239 coding downstream 774963 22614859 ~ 22621980 (+)
rnf44 rnf44 coding downstream 893839 22733735 ~ 22754432 (+)
pdlim7 pdlim7 coding downstream 941470 22781366 ~ 22825233 (+)
LOC113546949 LOC108277208 coding downstream 1301818 23141714 ~ 23143760 (+)
G215064 NA non-coding upstream 24422 21774223 ~ 21807343 (+)
G215055 NA non-coding upstream 113689 21717692 ~ 21718076 (+)
G215042 NA non-coding upstream 174930 21656261 ~ 21656835 (+)
G214829 NA non-coding upstream 196691 21634851 ~ 21635074 (+)
G214825 NA non-coding upstream 214471 21617095 ~ 21617294 (+)
LOC117598973 NA non-coding downstream 48135 21888031 ~ 21888800 (+)
LOC117598789 NA non-coding downstream 51702 21891598 ~ 21892131 (+)
LOC117598900 NA non-coding downstream 53273 21893169 ~ 21894161 (+)
LOC117598962 NA non-coding downstream 59012 21898908 ~ 21899339 (+)
LOC117598935 NA non-coding downstream 69757 21909653 ~ 21910096 (+)
LOC117598860 LOC108275153 other upstream 1626 21829547 ~ 21830139 (+)
LOC117598939 NA other upstream 7653 21823669 ~ 21824112 (+)
LOC117598777 NA other upstream 100696 21730403 ~ 21731069 (+)
LOC117598855 NA other upstream 104444 21726462 ~ 21727321 (+)
LOC117598966 NA other upstream 110704 21720633 ~ 21721061 (+)
LOC117598912 NA other downstream 4950 21844846 ~ 21845329 (+)
LOC117598851 NA other downstream 7462 21847358 ~ 21848007 (+)
LOC117598872 NA other downstream 9360 21849256 ~ 21850054 (+)
LOC117598928 LOC108275153 other downstream 15833 21855729 ~ 21856436 (+)
LOC117598957 NA other downstream 24091 21863987 ~ 21864616 (+)

Expression


Co-expression Network