LOC117598954


Basic Information

Item Value
gene id LOC117598954
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 21684024 ~ 21684645 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>LOC117598954
tacactgaGCAGCCTGTGGTTGTGGGTTTAATACATCCATAGTGGTCATGGACACTCCCTATTCAAATAGAGTCGGGTATAAACAGCATGTTCTTGGCTGTTCTAGTTTCCAGTGAGCTCTGTGATAGATAACACTCCCATACACTTTAAATCTGGGTGAAGCAGAACTCAGAGAAGGATGATTTTAggacattgtattttatttgtactaATTTCATATTCTTATGGACAGTCCCTGACCTCCTCTGCTTCTGTGGTGAAGAGACCTGGAGAGTCAGTCACTCTGTCCTGTACTGTCTCCGGATTCTCAATGAGCAGCAACTACATGCACTGGATCCGTCAGAAACCAGGAAAAGGACTGGAGTGGATCGCGCGCATTGACACTGGCTCTAGCACAacattctctcagtctctgcagGGCCAGTTCTCCATCACTAAAGACAccaataaaaacatgctgtaccTAGAAGTGAAGAGTCTGAAAGCTGAAGACAcggctgtttattactgtgcaggagac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC117598954 True 520 V_segment 0.45 2 21684024 21684645

Neighbor

gene id symbol gene type direction distance location
LOC113546932 NA coding downstream 591 21672162 ~ 21683433 (-)
LOC117598868 NA coding downstream 7217 21675638 ~ 21676807 (-)
LOC117598919 NA coding downstream 10694 21672822 ~ 21673330 (-)
b4galt1l b4galt1,LOC108277608,LOC106602599,LOC106602598 coding downstream 70149 21586098 ~ 21613875 (-)
srp72 srp72,LOC107662169,LOC107731365,LOC107552350,LOC107729332 coding downstream 303808 21368754 ~ 21380216 (-)
LOC117598776 NA coding upstream 1052 21685697 ~ 21691576 (-)
LOC117598896 NA coding upstream 8538 21693183 ~ 21693634 (-)
topaz1 topaz1 coding upstream 868079 22552724 ~ 22582102 (-)
trak1b LOC108275079,LOC108414239,LOC107706145 coding upstream 945236 22629881 ~ 22644263 (-)
LOC113546927 ctnnb1,LOC108256545,LOC108414240,LOC103034575,LOC107710337,LOC107706261,LOC107688361,LOC107654753 coding upstream 976915 22661560 ~ 22676748 (-)
G215168 NA non-coding downstream 38130 21645119 ~ 21645894 (-)
G214980 NA non-coding downstream 49160 21634658 ~ 21634864 (-)
G214978 rest,LOC106604639 non-coding downstream 52157 21628129 ~ 21631867 (-)
G214977 NA non-coding downstream 62103 21620678 ~ 21621921 (-)
G214976 NA non-coding downstream 67192 21616602 ~ 21616832 (-)
G215194 NA non-coding upstream 38826 21723471 ~ 22134451 (-)
G215217 NA non-coding upstream 337441 22022086 ~ 22078908 (-)
G215171 NA non-coding upstream 340838 22025483 ~ 22082843 (-)
G215221 NA non-coding upstream 395517 22080162 ~ 22136007 (-)
G215224 NA non-coding upstream 436811 22121456 ~ 22133365 (-)
LOC113528016 thegl other downstream 324834 21352281 ~ 21359190 (-)
slc16a2 LOC108279893,LOC107596364 other downstream 411517 21236802 ~ 21272507 (-)
fgf2 fgf2,LOC107717315 other downstream 655943 21014439 ~ 21028081 (-)
spry1 spry1 other downstream 778753 20900057 ~ 20905271 (-)
hs3st1 hs3st1 other downstream 1470395 20205339 ~ 20213629 (-)
G215188 NA other upstream 1059 21685704 ~ 21970414 (-)
LOC117598877 NA other upstream 10227 21694872 ~ 21695359 (-)
G215182 LOC108275153 other upstream 12015 21696660 ~ 22285703 (-)
LOC117598964 NA other upstream 13098 21697743 ~ 21698174 (-)
LOC117598880 NA other upstream 14647 21699292 ~ 21699794 (-)

Expression


Co-expression Network