Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC117598956 |
| gene name | NA |
| gene type | non-coding |
| species | striped catfish (Pangasianodon hypophthalmus) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_047607.1 |
| NCBI id | CM018553.1 |
| chromosome length | 26458119 |
| location | 22181064 ~ 22181694 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| LOC117598956 | True | 524 | V_segment | 0.45 | 2 | 22181064 | 22181694 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC117598775 | NA | coding | upstream | 512182 | 21668341 ~ 21668882 (+) |
| LOC117598774 | NA | coding | upstream | 515320 | 21664594 ~ 21665744 (+) |
| LOC117598848 | NA | coding | upstream | 517524 | 21663095 ~ 21663540 (+) |
| LOC117599000 | NA | coding | upstream | 520025 | 21660425 ~ 21661039 (+) |
| LOC117598992 | NA | coding | upstream | 521957 | 21658502 ~ 21659107 (+) |
| LOC113546929 | NA | coding | downstream | 355808 | 22537502 ~ 22548866 (+) |
| cckb | LOC108274239 | coding | downstream | 433165 | 22614859 ~ 22621980 (+) |
| rnf44 | rnf44 | coding | downstream | 552041 | 22733735 ~ 22754432 (+) |
| pdlim7 | pdlim7 | coding | downstream | 599672 | 22781366 ~ 22825233 (+) |
| LOC113546949 | LOC108277208 | coding | downstream | 960020 | 23141714 ~ 23143760 (+) |
| LOC117598859 | NA | non-coding | upstream | 952 | 22179544 ~ 22180112 (+) |
| LOC117598949 | NA | non-coding | upstream | 7284 | 22173243 ~ 22173780 (+) |
| LOC117598871 | NA | non-coding | upstream | 9119 | 22170368 ~ 22171945 (+) |
| LOC117598874 | NA | non-coding | upstream | 19749 | 22160525 ~ 22161315 (+) |
| LOC117598903 | NA | non-coding | upstream | 27638 | 22152939 ~ 22153426 (+) |
| LOC117598807 | NA | non-coding | downstream | 1845 | 22183539 ~ 22183984 (+) |
| LOC117598808 | NA | non-coding | downstream | 11380 | 22193074 ~ 22193583 (+) |
| G215127 | NA | non-coding | downstream | 79197 | 22260891 ~ 22282993 (+) |
| G215149 | NA | non-coding | downstream | 158527 | 22340221 ~ 22343637 (+) |
| G215153 | NA | non-coding | downstream | 220256 | 22401950 ~ 22405524 (+) |
| G215036 | LOC108275153 | other | upstream | 4143 | 22176467 ~ 22176921 (+) |
| LOC117598947 | NA | other | upstream | 49882 | 22126928 ~ 22131182 (+) |
| LOC117598959 | LOC108275153 | other | upstream | 60601 | 22119975 ~ 22120463 (+) |
| LOC117598804 | NA | other | upstream | 68279 | 22111931 ~ 22112785 (+) |
| LOC117598936 | NA | other | upstream | 70243 | 22110378 ~ 22110821 (+) |
| LOC117598950 | NA | other | downstream | 13057 | 22194751 ~ 22195274 (+) |
| LOC117598809 | NA | other | downstream | 15394 | 22197088 ~ 22197594 (+) |
| LOC117598933 | LOC108275153 | other | downstream | 17245 | 22198939 ~ 22206286 (+) |
| LOC117598854 | NA | other | downstream | 27013 | 22208707 ~ 22209325 (+) |
| LOC117598895 | NA | other | downstream | 190577 | 22372271 ~ 22373023 (+) |
