LOC117598960


Basic Information

Item Value
gene id LOC117598960
gene name NA
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 22046529 ~ 22046978 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>LOC117598960
gtacaaacaacacacaccatgttctctacatctctactgctcctgctggcagctgcttcctatgtgcatggttatgaactgactcagcctgcttccatgacagtccagccaggccagagtctctccatcccctgcaaggtttcatattcagttacgagTTATGGTACAGGTTGgatccgacaacctgcaggaaaagctctggagtggattggaCGCATTGATAGCAGTGGGAGTACAGgttacagtgacaaactgaaaaataagttcagcatctccagagacactgctactaacacaataacaattggaggacagaatctgcaaactgaagacacagctgtgtattactgcgcaagt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC117598960 True 357 V_segment 0.47 2 22046529 22046978

Neighbor

gene id symbol gene type direction distance location
LOC117598775 NA coding upstream 377647 21668341 ~ 21668882 (+)
LOC117598774 NA coding upstream 380785 21664594 ~ 21665744 (+)
LOC117598848 NA coding upstream 382989 21663095 ~ 21663540 (+)
LOC117599000 NA coding upstream 385490 21660425 ~ 21661039 (+)
LOC117598992 NA coding upstream 387422 21658502 ~ 21659107 (+)
LOC113546929 NA coding downstream 490524 22537502 ~ 22548866 (+)
cckb LOC108274239 coding downstream 567881 22614859 ~ 22621980 (+)
rnf44 rnf44 coding downstream 686757 22733735 ~ 22754432 (+)
pdlim7 pdlim7 coding downstream 734388 22781366 ~ 22825233 (+)
LOC113546949 LOC108277208 coding downstream 1094736 23141714 ~ 23143760 (+)
G215035 NA non-coding upstream 25794 22015818 ~ 22020735 (+)
G215069 NA non-coding upstream 51464 21916419 ~ 21995065 (+)
G215075 NA non-coding upstream 80296 21923978 ~ 21966233 (+)
LOC117598970 NA non-coding upstream 133180 21912612 ~ 21913349 (+)
LOC117598790 NA non-coding upstream 134710 21911288 ~ 21911819 (+)
G215093 NA non-coding downstream 11366 22058344 ~ 22059756 (+)
G215095 NA non-coding downstream 30512 22077490 ~ 22133009 (+)
G215107 NA non-coding downstream 86224 22133202 ~ 22401320 (+)
LOC117598974 NA non-coding downstream 90317 22137295 ~ 22139333 (+)
LOC117598906 NA non-coding downstream 93806 22140784 ~ 22141255 (+)
G215082 NA other upstream 1924 22044131 ~ 22044605 (+)
LOC117598857 NA other upstream 3515 22042448 ~ 22043014 (+)
LOC117598925 NA other upstream 6279 22039806 ~ 22040250 (+)
LOC117598942 NA other upstream 8618 22037335 ~ 22037911 (+)
LOC117598799 NA other upstream 9283 22035678 ~ 22037246 (+)
LOC117598800 NA other downstream 2027 22049005 ~ 22050596 (+)
LOC117598951 NA other downstream 3710 22050688 ~ 22051217 (+)
G215014 NA other downstream 6896 22053874 ~ 22073497 (+)
LOC117598904 NA other downstream 6905 22053883 ~ 22054349 (+)
LOC117598916 NA other downstream 16296 22063274 ~ 22063903 (+)

Expression


Co-expression Network