Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC117598963 |
| gene name | NA |
| gene type | misc |
| species | striped catfish (Pangasianodon hypophthalmus) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_047607.1 |
| NCBI id | CM018553.1 |
| chromosome length | 26458119 |
| location | 21972594 ~ 21973025 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| LOC117598963 | True | 339 | V_segment | 0.46 | 2 | 21972594 | 21973025 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC117598896 | NA | coding | downstream | 278960 | 21693183 ~ 21693634 (-) |
| LOC117598776 | NA | coding | downstream | 281018 | 21685697 ~ 21691576 (-) |
| LOC117598954 | NA | coding | downstream | 287949 | 21684024 ~ 21684645 (-) |
| LOC117598868 | NA | coding | downstream | 295787 | 21675638 ~ 21676807 (-) |
| LOC117598919 | NA | coding | downstream | 299264 | 21672822 ~ 21673330 (-) |
| topaz1 | topaz1 | coding | upstream | 579699 | 22552724 ~ 22582102 (-) |
| trak1b | LOC108275079,LOC108414239,LOC107706145 | coding | upstream | 656856 | 22629881 ~ 22644263 (-) |
| LOC113546927 | ctnnb1,LOC108256545,LOC108414240,LOC103034575,LOC107710337,LOC107706261,LOC107688361,LOC107654753 | coding | upstream | 688535 | 22661560 ~ 22676748 (-) |
| LOC113546904 | LOC108258503 | coding | upstream | 705139 | 22678164 ~ 22696823 (-) |
| cdhr2 | NA | coding | upstream | 733529 | 22706554 ~ 22729853 (-) |
| G215168 | NA | non-coding | downstream | 326700 | 21645119 ~ 21645894 (-) |
| G214980 | NA | non-coding | downstream | 337730 | 21634658 ~ 21634864 (-) |
| G214978 | rest,LOC106604639 | non-coding | downstream | 340727 | 21628129 ~ 21631867 (-) |
| G214977 | NA | non-coding | downstream | 350673 | 21620678 ~ 21621921 (-) |
| G214976 | NA | non-coding | downstream | 355762 | 21616602 ~ 21616832 (-) |
| G215217 | NA | non-coding | upstream | 49061 | 22022086 ~ 22078908 (-) |
| G215171 | NA | non-coding | upstream | 52458 | 22025483 ~ 22082843 (-) |
| G215221 | NA | non-coding | upstream | 107137 | 22080162 ~ 22136007 (-) |
| G215224 | NA | non-coding | upstream | 148431 | 22121456 ~ 22133365 (-) |
| G215172 | NA | non-coding | upstream | 152647 | 22125672 ~ 22140140 (-) |
| LOC117598858 | NA | other | downstream | 2176 | 21969852 ~ 21970418 (-) |
| G215188 | NA | other | downstream | 2180 | 21685704 ~ 21970414 (-) |
| LOC113546933 | NA | other | downstream | 6212 | 21965890 ~ 21966382 (-) |
| LOC117598909 | NA | other | downstream | 9587 | 21962438 ~ 21963007 (-) |
| LOC117595694 | NA | other | downstream | 14842 | 21957298 ~ 21957752 (-) |
| LOC117598917 | NA | other | upstream | 238325 | 22211350 ~ 22211895 (-) |
| LOC117598898 | NA | other | upstream | 241519 | 22214544 ~ 22215344 (-) |
| LOC113546935 | NA | other | upstream | 242717 | 22215742 ~ 22217034 (-) |
| LOC117598811 | NA | other | upstream | 244283 | 22217308 ~ 22219064 (-) |
| LOC117598884 | LOC108275153 | other | upstream | 249372 | 22222397 ~ 22222851 (-) |
