LOC117598965 (LOC108275153)


Basic Information

Item Value
gene id LOC117598965
gene name LOC108275153
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 22075405 ~ 22087412 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>LOC117598965
atgttctctacatctctactgctcctgctggcagctgcttcctatgtgcatggtgtggaactgactcagcctgcttccatgacagtccagccaggccagagtctctccatcccctgcaaggtttcatattcagttacgagCTATACTACACATTGgatccgacaacctgcaggaaaagctctggagtggattggaTACATTGATAGTGATGGGGATACAGcttacagtgacaaactgaaaaacaagttcagcatctccagagacactgctactaacacaataacaattcgaggacagaatctgcaaactcaagacacagctgtgtattactgctaA
>TU254576
tttaaatatgttttaaatacGttctcctcccatcatcagcagataagcaaatacaagcgtcagggctggatatcactctatttatgtgatgtgatggtctctgttaaactttggagaacagagaagaccccagtacaaacaacacacaccatgttctctacatctctactgctcctgctggcagctgcttcctatgtgcatggtgtggaactgactcagcctgcttccatgacagtccagccaggccagagtctctccatcccctgcaaggtttcatattcagttacgagCTATACTACACATTGgatccgacaacctgcaggaaaagctctggagtggattggaTACATTGATAGTGATGGGGATACAGcttacagtgacaaactgaaaaacaagttcagcatctccagagacactgctactaacacaataacaattcgaggacagaatctgcaaactcaagacacagctgtgtattactgc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC117598965 False 336 V_segment 0.46 2 22086984 22087412
TU254576 True 483 TUCP 0.44 3 22075405 22087409

Neighbor

gene id symbol gene type direction distance location
LOC117598775 NA coding upstream 406523 21668341 ~ 21668882 (+)
LOC117598774 NA coding upstream 409661 21664594 ~ 21665744 (+)
LOC117598848 NA coding upstream 411865 21663095 ~ 21663540 (+)
LOC117599000 NA coding upstream 414366 21660425 ~ 21661039 (+)
LOC117598992 NA coding upstream 416298 21658502 ~ 21659107 (+)
LOC113546929 NA coding downstream 450090 22537502 ~ 22548866 (+)
cckb LOC108274239 coding downstream 527447 22614859 ~ 22621980 (+)
rnf44 rnf44 coding downstream 646323 22733735 ~ 22754432 (+)
pdlim7 pdlim7 coding downstream 693954 22781366 ~ 22825233 (+)
LOC113546949 LOC108277208 coding downstream 1054302 23141714 ~ 23143760 (+)
G215093 NA non-coding upstream 15649 22058344 ~ 22059756 (+)
G215035 NA non-coding upstream 54670 22015818 ~ 22020735 (+)
G215069 NA non-coding upstream 80340 21916419 ~ 21995065 (+)
G215075 NA non-coding upstream 109172 21923978 ~ 21966233 (+)
LOC117598970 NA non-coding upstream 162056 21912612 ~ 21913349 (+)
G215107 NA non-coding downstream 45790 22133202 ~ 22401320 (+)
LOC117598974 NA non-coding downstream 49883 22137295 ~ 22139333 (+)
LOC117598906 NA non-coding downstream 53372 22140784 ~ 22141255 (+)
LOC117598961 NA non-coding downstream 54673 22142085 ~ 22142516 (+)
LOC113546937 NA non-coding downstream 57538 22144950 ~ 22145717 (+)
LOC117598801 NA other upstream 1836 22073061 ~ 22073569 (+)
G215014 NA other upstream 1908 22053874 ~ 22073497 (+)
LOC117598890 NA other upstream 5580 22068955 ~ 22069825 (+)
LOC117598943 NA other upstream 10322 22064562 ~ 22065083 (+)
G214998 LOC108275153 other upstream 10408 22039652 ~ 22064997 (+)
LOC117598893 NA other downstream 2225 22089637 ~ 22090103 (+)
LOC117598803 NA other downstream 3951 22091363 ~ 22091837 (+)
LOC117598915 NA other downstream 16224 22103636 ~ 22104185 (+)
LOC117598894 NA other downstream 18376 22105788 ~ 22106309 (+)
LOC117598913 NA other downstream 20192 22107604 ~ 22108104 (+)

Expression


Co-expression Network