LOC117598992


Basic Information

Item Value
gene id LOC117598992
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 21658502 ~ 21659107 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>LOC117598992
atgttctctacatctctactgctcctgctggcagctgcttcctatgtgcatggtgtggaactgactcagcctgcttccatgacagtccagccaggccagagtctctccatcccctgcaaggtttcatattcagttacgagTGAAGAAACAGCTTGgatccgacaacctgcaggaaaagctctggagtggattggaATCATCTATAGTGGTGGGAGTACAtattacagtgacaaactgaaaaacaagttcagcatctccagagacactgctactaacacaataacaattcgaggacagaatctgcaaactgaagacacagctgtgtattactgcgctcgtgatccacacagtgagacagatcaacaacatccctgtacaaaaacacccagtacAGAAAACTCTTAAGGGCAGTGAAACAGTGTACAGTCTCAGTATGTTCAGTGACACTGTTTCATCCGTAGTGTATATTATTACTAAAATGCTTAAAACCAATCAGAGGATGTAGTAAATAAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC117598992 True 513 V_segment 0.44 2 21658502 21659107

Neighbor

gene id symbol gene type direction distance location
LOC117598748 NA coding upstream 10699 21647236 ~ 21647803 (+)
LOC117598747 NA coding upstream 11879 21645852 ~ 21646623 (+)
rest rest coding upstream 26596 21620631 ~ 21631906 (+)
LOC113540583 NA coding upstream 112410 21541990 ~ 21546092 (+)
LOC117598820 LOC108280985,LOC108277545 coding upstream 178060 21454118 ~ 21480442 (+)
LOC117599000 NA coding downstream 1318 21660425 ~ 21661039 (+)
LOC117598848 NA coding downstream 3988 21663095 ~ 21663540 (+)
LOC117598774 NA coding downstream 5487 21664594 ~ 21665744 (+)
LOC117598775 NA coding downstream 9234 21668341 ~ 21668882 (+)
LOC113546929 NA coding downstream 878395 22537502 ~ 22548866 (+)
G215042 NA non-coding upstream 1667 21656261 ~ 21656835 (+)
G214829 NA non-coding upstream 23428 21634851 ~ 21635074 (+)
G214825 NA non-coding upstream 41208 21617095 ~ 21617294 (+)
G214747 LOC108280967 non-coding upstream 102101 21551549 ~ 21556401 (+)
LOC117598827 LOC108280967,LOC108277545,LOC108277574 non-coding upstream 152716 21502137 ~ 21505786 (+)
G215055 NA non-coding downstream 58585 21717692 ~ 21718076 (+)
G215059 NA non-coding downstream 65504 21724611 ~ 22137078 (+)
G215064 NA non-coding downstream 115116 21774223 ~ 21807343 (+)
LOC117598973 NA non-coding downstream 228924 21888031 ~ 21888800 (+)
LOC117598789 NA non-coding downstream 232491 21891598 ~ 21892131 (+)
G215015 LOC108275153 other upstream 9350 21646080 ~ 21649152 (+)
LOC113540569 LOC108280981,LOC108280985,LOC108277545,LOC108277574,LOC108280967 other upstream 93126 21514573 ~ 21565376 (+)
LOC113540568 LOC108280981,LOC108280985,LOC108277574,LOC108277545,LOC108280967 other upstream 145462 21482022 ~ 21513040 (+)
hopx hopx other upstream 309416 21340416 ~ 21349086 (+)
nudt6 nudt6 other upstream 634415 21011774 ~ 21024087 (+)
G215022 NA other downstream 3977 21663084 ~ 22000809 (+)
G215010 LOC108275153 other downstream 5451 21664558 ~ 21711769 (+)
G215008 LOC108275153 other downstream 52087 21711194 ~ 21721059 (+)
LOC117598918 LOC108275153 other downstream 52208 21711315 ~ 21711778 (+)
LOC117598875 NA other downstream 54822 21713929 ~ 21714624 (+)

Expression


Co-expression Network