Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC117599000 |
| gene name | NA |
| gene type | coding |
| species | striped catfish (Pangasianodon hypophthalmus) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_047607.1 |
| NCBI id | CM018553.1 |
| chromosome length | 26458119 |
| location | 21660425 ~ 21661039 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| id | description |
|---|---|
| ko04640 | Hematopoietic cell lineage |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| LOC117599000 | True | 532 | V_segment | 0.45 | 2 | 21660425 | 21661039 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC117598992 | NA | coding | upstream | 1318 | 21658502 ~ 21659107 (+) |
| LOC117598748 | NA | coding | upstream | 12622 | 21647236 ~ 21647803 (+) |
| LOC117598747 | NA | coding | upstream | 13802 | 21645852 ~ 21646623 (+) |
| rest | rest | coding | upstream | 28519 | 21620631 ~ 21631906 (+) |
| LOC113540583 | NA | coding | upstream | 114333 | 21541990 ~ 21546092 (+) |
| LOC117598848 | NA | coding | downstream | 2056 | 21663095 ~ 21663540 (+) |
| LOC117598774 | NA | coding | downstream | 3555 | 21664594 ~ 21665744 (+) |
| LOC117598775 | NA | coding | downstream | 7302 | 21668341 ~ 21668882 (+) |
| LOC113546929 | NA | coding | downstream | 876463 | 22537502 ~ 22548866 (+) |
| cckb | LOC108274239 | coding | downstream | 953820 | 22614859 ~ 22621980 (+) |
| G215042 | NA | non-coding | upstream | 3590 | 21656261 ~ 21656835 (+) |
| G214829 | NA | non-coding | upstream | 25351 | 21634851 ~ 21635074 (+) |
| G214825 | NA | non-coding | upstream | 43131 | 21617095 ~ 21617294 (+) |
| G214747 | LOC108280967 | non-coding | upstream | 104024 | 21551549 ~ 21556401 (+) |
| LOC117598827 | LOC108280967,LOC108277545,LOC108277574 | non-coding | upstream | 154639 | 21502137 ~ 21505786 (+) |
| G215055 | NA | non-coding | downstream | 56653 | 21717692 ~ 21718076 (+) |
| G215059 | NA | non-coding | downstream | 63572 | 21724611 ~ 22137078 (+) |
| G215064 | NA | non-coding | downstream | 113184 | 21774223 ~ 21807343 (+) |
| LOC117598973 | NA | non-coding | downstream | 226992 | 21888031 ~ 21888800 (+) |
| LOC117598789 | NA | non-coding | downstream | 230559 | 21891598 ~ 21892131 (+) |
| G215015 | LOC108275153 | other | upstream | 11273 | 21646080 ~ 21649152 (+) |
| LOC113540569 | LOC108280981,LOC108280985,LOC108277545,LOC108277574,LOC108280967 | other | upstream | 95049 | 21514573 ~ 21565376 (+) |
| LOC113540568 | LOC108280981,LOC108280985,LOC108277574,LOC108277545,LOC108280967 | other | upstream | 147385 | 21482022 ~ 21513040 (+) |
| hopx | hopx | other | upstream | 311339 | 21340416 ~ 21349086 (+) |
| nudt6 | nudt6 | other | upstream | 636338 | 21011774 ~ 21024087 (+) |
| G215022 | NA | other | downstream | 2045 | 21663084 ~ 22000809 (+) |
| G215010 | LOC108275153 | other | downstream | 3519 | 21664558 ~ 21711769 (+) |
| G215008 | LOC108275153 | other | downstream | 50155 | 21711194 ~ 21721059 (+) |
| LOC117598918 | LOC108275153 | other | downstream | 50276 | 21711315 ~ 21711778 (+) |
| LOC117598875 | NA | other | downstream | 52890 | 21713929 ~ 21714624 (+) |
