G203049


Basic Information

Item Value
gene id G203049
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 158552 ~ 158933 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU240368
ggcagtatagaccgTACGTTTGGCAGTATAGATCGTATGATGGGCATTATAGATCGTACGTTCACcagtatagatcgtacgttcagcagtatagatcgtacgttcAGCAGTATAGATCGTATGATGGGCATtatagatcgtacgttcggcagtatagaccgtacgttcggcagtatagaccgtacgttcggcagtatagatcgtacgttcggcagtatagatgGTATGATGGGCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU240368 True 235 lncRNA 0.46 2 158552 158933

Neighbor

gene id symbol gene type direction distance location
syt5a syt5a,LOC107658481,LOC107583026,LOC107689676,LOC107730742,LOC107548337 coding upstream 95146 55561 ~ 63406 (+)
LOC113525294 NA coding upstream 152770 2041 ~ 5782 (+)
LOC117598847 NA coding downstream 11912 170845 ~ 171952 (+)
ap2a1 ap2a1,LOC107554102,LOC107729492,LOC107730730,LOC107583017,LOC104937940,LOC103373570,LOC105939792 coding downstream 138738 297671 ~ 332191 (+)
si:ch211-195b15.8 LOC108280354,LOC107579758 coding downstream 178088 337021 ~ 340158 (+)
rras rras,LOC107658490,LOC107583016,LOC107729461,LOC107730736,LOC107554112,LOC107689668 coding downstream 188789 347722 ~ 356931 (+)
prrg2 NA coding downstream 204444 363377 ~ 369013 (+)
G203043 NA non-coding upstream 11835 144076 ~ 146717 (+)
G202982 NA non-coding upstream 107477 38437 ~ 51075 (+)
G202983 NA non-coding upstream 116535 40638 ~ 42017 (+)
G202968 NA non-coding upstream 138349 19977 ~ 20203 (+)
G203058 NA non-coding downstream 16500 175433 ~ 175991 (+)
G203108 NA non-coding downstream 100258 259191 ~ 307393 (+)
G203071 NA non-coding downstream 286541 445474 ~ 503897 (+)
G203134 NA non-coding downstream 350986 509919 ~ 512745 (+)
G203135 NA non-coding downstream 354656 513589 ~ 515888 (+)
G203077 NA other downstream 40327 199260 ~ 341276 (+)
G203081 NA other downstream 43017 201950 ~ 202805 (+)
prl LOC108280547,LOC108427375,LOC103023606 other downstream 107947 266880 ~ 359354 (+)
LOC113525016 NA other downstream 122279 281212 ~ 367855 (+)
LOC117598976 NA other downstream 364180 523113 ~ 529624 (+)

Expression


Co-expression Network