G203071


Basic Information

Item Value
gene id G203071
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 445474 ~ 503897 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU240415
ACGGAAATGCGTCGGACAGGTGAGTGCGAGCGGCGGCGCGCGGGTGGGGCTCTGCGCTCGTGCATGTAGCTCCTAACaaaagtgggggaaaaagatTTAGAAAGAGAGGAAGCAGCTTTTCTATGGCGTCCGAGAATCTGCTGGAGAGAGGAAGAGCTTCTCCTCGGAGTGTTTATTAGAGCGCGCGCAGGAACCGGAGGAGAGCCGAGCAGGAGGAAAGAGACATGACTtccacagacagagagagcgaggtGGTCAGGGACGGGTGCAGAACTGGAGACAAAGATCAGAGTTGGATCCCGAAGGTGATAAAGAAGAGAGTGTGCACGGCGTTTGTGGAGGATCCTCTCAGTAATGGAGATGCATCGAGAATCGTTTTATAATCGAATCTTCTGAATCGAATCGAATCTTTTGAATCAAATTGAATCGAATCATGAGTCAACTTAACAATTCTCAACCCTGAGTTCTACACACTGTGTTTCTGCGCTGATCTGGGGTCAGTGTGTACTGTCGTCATGTAAAgtatgttttacacacacacacacacacacgcacacgcacatgcacacacacactgttgtgtttgttCTAAAAGGACATTATGCTGCTGAGTGTCACTTTCCCCCGGTCACACTGACCTCctgcttggtgtgtgtgtgtgtgtgtgtggtgtgtgtgtgtaggtgtgtgtgtgtaggtgtgtgtgtgtaggtgtgtgtgtgtaggtgtgtgtgtgtaggtgtgtgtgtgtgtgtgtgtgaggaatcgATATGTACGAGGTcagaaagttttaaaacagTGAAGTATGTCGCTGTTCAGCTTCCAGTTCTTTAAACACTTATTCACTAAAATATACGTTTTAGGTTTAATATAAATCACAAGTGTTTGTACACGTgcgctttattttatttagtgtttcAGTGGATATTATTTATATCTTTTAGACAAATGTGaagtaaatgtatttaaatttaataataataataataataataataatgtacatgAGTTTCCTGCCTGTTCCTGA

Function

GO:

id name namespace
GO:0098813 nuclear chromosome segregation biological_process
GO:0000819 sister chromatid segregation biological_process
GO:0000070 mitotic sister chromatid segregation biological_process
GO:0140014 mitotic nuclear division biological_process
GO:0048285 organelle fission biological_process
GO:0007059 chromosome segregation biological_process
GO:0030261 chromosome condensation biological_process
GO:0007076 mitotic chromosome condensation biological_process
GO:1903047 mitotic cell cycle process biological_process
GO:0000278 mitotic cell cycle biological_process
GO:0000280 nuclear division biological_process
GO:0044424 obsolete intracellular part cellular_component
GO:0005622 intracellular anatomical structure cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU240415 True 1027 lncRNA 0.44 3 445474 503897

Neighbor

gene id symbol gene type direction distance location
scaf1 scaf1,LOC107658492,LOC107583012,LOC105925210 coding upstream 8580 423846 ~ 436894 (+)
LOC113525002 LOC108280599 coding upstream 24249 418751 ~ 421225 (+)
prr12b prr12,prr12b,LOC107729421,LOC107658420,LOC107730729,LOC107689691 coding upstream 41183 370566 ~ 404291 (+)
prrg2 NA coding upstream 76461 363377 ~ 369013 (+)
rras rras,LOC107658490,LOC107583016,LOC107729461,LOC107730736,LOC107554112,LOC107689668 coding upstream 88543 347722 ~ 356931 (+)
pax10 LOC108280587,LOC107557340,LOC106521360,LOC107579793 coding downstream 39503 543400 ~ 549365 (+)
LOC113524995 NA coding downstream 51392 555289 ~ 563409 (+)
bcl2l12 NA coding downstream 69497 573394 ~ 586456 (+)
srrm2 LOC108280305,LOC107583001,LOC107689653,LOC107729482,LOC107730748 coding downstream 149140 653037 ~ 666347 (+)
si:dkey-16l2.16 si:dkey-16l2.16,LOC108280555,LOC108427354,LOC107729502,LOC107554119,LOC107658507 coding downstream 186292 690189 ~ 705453 (+)
G203108 NA non-coding upstream 138081 259191 ~ 307393 (+)
G203058 NA non-coding upstream 269483 175433 ~ 175991 (+)
G203049 NA non-coding upstream 286541 158552 ~ 158933 (+)
G203043 NA non-coding upstream 298757 144076 ~ 146717 (+)
G202982 NA non-coding upstream 394399 38437 ~ 51075 (+)
G203134 NA non-coding downstream 6022 509919 ~ 512745 (+)
G203135 NA non-coding downstream 9692 513589 ~ 515888 (+)
G203141 NA non-coding downstream 27490 531387 ~ 531618 (+)
G203272 NA non-coding downstream 49824 553721 ~ 553946 (+)
G203277 NA non-coding downstream 82692 586589 ~ 586882 (+)
LOC113525016 NA other upstream 77619 281212 ~ 367855 (+)
prl LOC108280547,LOC108427375,LOC103023606 other upstream 86120 266880 ~ 359354 (+)
G203077 NA other upstream 104198 199260 ~ 341276 (+)
G203081 NA other upstream 242669 201950 ~ 202805 (+)
G203047 NA other upstream 282338 156620 ~ 163136 (+)
LOC117598976 NA other downstream 19216 523113 ~ 529624 (+)
unc119.2 LOC108280499,LOC107689658,LOC107730769,LOC107658437,LOC108427309 other downstream 145547 649444 ~ 652250 (+)
thoc6 thoc6,LOC107580143,LOC108280484,LOC107730738,LOC107689651,LOC106600718 other downstream 162911 666808 ~ 723692 (+)
rnf25 rnf25 other downstream 203841 707738 ~ 717019 (+)
si:dkey-16l2.17 LOC108280473 other downstream 222832 726729 ~ 732890 (+)

Expression


Co-expression Network