G203134


Basic Information

Item Value
gene id G203134
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 509919 ~ 512745 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU240501
tttGGCTTTATTTGATTTGGAATTCACAGAGAAATGTTTCACCAGTAAATAATGACAAAAGCGTGTCAACTTCCAAACACCTTCTGTCCTTCTCTAtacctccctctctccctctccctctctccctctccctctttcctctgtcctctcctctccctctctccctgtgGCTACGTCCACATTAATCCGGATAGATCTGAAACCTGCATGGCTTTCGCCTGCGTCATTTCAGtcaggtgtttatttaaaaatacaatctGAAGGTTGTACAAAGTGACATTAATCTTTAACAAAGCCATCAAACTGGACAGCAGCCACACCAACTGCAGCACAACATCGTCCACCATCCTGTTTGTTTTGAGTCgaatgggtcacatgactgCGTCACGTGTCTAAAGATACGTCATTGTTTTGGCATATGTCGGTTTCTCAGCACATTTAATCAGGTGGGAGAGCGTTTTCGAAAAGCTCCGTTTTCGCCGGACAAAAACGCCACCTCAGTGTGGACGAAAGCACCCAAACGTAGAGAAAAAGATGCGTTTTCAGATTTATCTGGATTAATGTGGACGTAGCCGGTGAGTGGTCTCTCTACAGGTGATGCGAGATGTCAGGCAGCGGTGGTTATTGTGTGTTCGGTGTGTAACAGCTCAGTTCAGCCGCTCGGCCGTTTATTCAGTGCGTAACTCCGGTGTGTTAATCAACAAACACGAACTGATTCCCGAGTGTGGCTGACCCCTGATCCCTGATCCCTGACCCCTGACCCTGATCCTaactgtgacccTGATCCtgactgtgaccctgatcctgactgtgaccctgatcctgactgtgatCCTGACTGTGACCCTGATGTCCTCCTGAGCTTCTGGGTTTGGGTGAAGAGTGTAAACACAGTGTACAGGTGAGGAAGCTCACAACAACCTCTGCTGTTAATGCTGTCATGCCCTCCCCAATCTTACCTctcaatatatatacatattttaaatcctGTATTATTACAGCGCCCCCTGGTGTTTCGGAGGCCTTAAGTCATCGTTTATAGCTCTAACGGCCCAGAACAGTCGTGTCCATCACAAGTACACGTCTCCAGCCCCAGATTTATCTTTAGAACTTCTTCCTGAATAAAACGTTCATCTGACAGACCTGCCAACCATCGACTTGTCCTTTCACAAATCTAAAGTCTCACGTCCCTTGTGGAAATCGTGACGTTTCTACATGGCTGAAATTTTCATGAAATCCGCTGCTCAAACTGTCTGAACGGTGCAGGAGAGCAAACAGCATTGTTTAATCACTTCTTTGACCATTTTCAGTGGCGTTCCTAATAAATCGATTTAACTGATGTAAGGGCTATAAGTGTGTAACGCTAGCtgagtttatttcacattaatgaactcagaACATTCTCTTTTACCGTGACAGAAAAGCGAGAGCACTGCGTCAGCACATCTTTCAAGCGGGAAAACTGAGTCGAGACGAGAGCACATTACTATTATGAGATGtgaggaagggggcggggcttccagggggtCCATTAATATCAGGGAAATCAAAAAACTtacgcaactgtcaatcattccagattcatgcATCAGTTGGCTCATCTACTGTTTTAACTGCGGGATAGAAAACTGTTCTTTTGGTGTTCTCTTACAATAAAATGCAggaaggttggcaggtctgcgTCGATGTTCCTTTTTTAACCACGTGATCGTGTGATGTCATCACTCAGCGTCCAGACAGGAACGCTCTGcattttatgtttatgaatatattttatatatattgaatatatatttatatatacatatgaagCACTCTGAGTAGTTTGTAGTTCGAATGTGGTGCTCTGTGTGTCGTCATCAGTCACTgaacataaatgttttaatgcttttagcaaataaacatttttaattaactttacaGCACTAAAACAGCACAGGAGTGGGAGGAGTCAGTggctgatgatgtcacatgaGTCAGGAAAATGTCCCTTTTTTGTTGATTAAAAATAACACCGCTACGCTTTTAACGTTTCTATTTAAATGGTGTTTCACCTGCACAGAAACATCAGCCACACTCGGgggtgtaaataaaatgtgctgttctgatcccactgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtaaacctggTTTTTAGTGAGTAAAATATGTGACTAAATAAATACTATCTGTTTCAGGTAAACTGAAATTCCCTCTCAGCATCCTTGACCCAATCAATCACTGACCCTTCTGTTCTGACCCCTGACCTTTAGCTCCGCCCCTAACAATCTAACCCTCCCACTCGTTAATGTAAAAcgttcatttcttttcattgtgGAATGAAATTCCAATATCCCCCCCTCTGTATGTTTAACTCTTTGACTCCTGACGCTGTTGAGATCAGATCGGATGAGATCAGATCAGAGCTCGTCGTGTTTCCTCGTCAGATCTTCTCCGTAATTAGTGGCTTGGCTGCCGACAAACATGTTCCAATTATCCAGAATCTCTGCCTTGGAAATTTTCTCGT
>TU240503
tttGGCTTTATTTGATTTGGAATTCACAGAGAAATGTTTCACCAGTAAATAATGACAAAAGCGTGTCAACTTCCAAACACCTTCTGTCCTTCTCTAtacctccctctctccctctccctctctccctctccctctttcctctgtcctctcctctccctctctccctgtgGCTACGTCCACATTAATCCGGATAGATCTGAAACCTGCATGGCTTTCGCCTGCGTCATTTCAGtcaggtgtttatttaaaaatacaatctGAAGGTTGTACAAAGTGACATTAATCTTTAACAAAGCCATCAAACTGGACAGCAGCCACACCAACTGCAGCACAACATCGTCCACCATCCTGTTTGTTTTGAGTCgaatgggtcacatgactgCGTCACGTGTCTAAAGATACGTCATTGTTTTGGCATATGTCGGTTTCTCAGCACATTTAATCAGGTGGGAGAGCGTTTTCGAAAAGCTCCGTTTTCGCCGGACAAAAACGCCACCTCAGTGTGGACGAAAGCACCCAAACGTAGAGAAAAAGATGCGTTTTCAGATTTATCTGGATTAATGTGGACGTAGCCGGTGAGTGGTCTCTCTACAGGTGATGCGAGATGTCAGGCAGCGGTGGTTATTGTGTGTTCGGTGTGTAACAGCTCAGTTCAGCCGCTCGGCCGTTTATTCAGTGCGTAACTCCGGTGTGTTAATCAACAAACACGAACTGATTCCCGAGTGTGGCTGACCCCTGATCCCTGATCCCTGACCCCTGACCCTGATCCTaactgtgaccctgatcctgaCTATGACCCTGATCCTaactgtgaccctgatcctgatcctgactgtgacccTGATCCtgactgtgaccctgatcctgactgtgaccctgatcctgactgtgatCCTGACTGTGACCCTGATGTCCTCCTGAGCTTCTGGGTTTGGGTGAAGAGTGTAAACACAGTGTACAGGTGAGGAAGCTCACAACAACCTCTGCTGTTAATGCTGTCATGCCCTCCCCAATCTTACCTctcaatatatatacatattttaaatcctGTATTATTACAGCGCCCCCTGGTGTTTCGGAGGCCTTAAGTCATCGTTTATAGCTCTAACGGCCCAGAACAGTCGTGTCCATCACAAGTACACGTCTCCAGCCCCAGATTTATCTTTAGAACTTCTTCCTGAATAAAACGTTCATCTGACAGACCTGCCAACCATCGACTTGTCCTTTCACAAATCTAAAGTCTCACGTCCCTTGTGGAAATCGTGACGTTTCTACATGGCTGAAATTTTCATGAAATCCGCTGCTCAAACTGTCTGAACGGTGCAGGAGAGCAAACAGCATTGTTTAATCACTTCTTTGACCATTTTCAGTGGCGTTCCTAATAAATCGATTTAACTGATGTAAGGGCTATAAGTGTGTAACGCTAGCtgagtttatttcacattaatgaactcagaACATTCTCTTTTACCGTGACAGAAAAGCGAGAGCACTGCGTCAGCACATCTTTCAAGCGGGAAAACTGAGTCGAGACGAGAGCACATTACTATTATGAGATGtgaggaagggggcggggcttccagggggtCCATTAATATCAGGGAAATCAAAAAACTtacgcaactgtcaatcattccagattcatgcATCAGTTGGCTCATCTACTGTTTTAACTGCGGGATAGAAAACTGTTCTTTTGGTGTTCTCTTACAATAAAATGCAggaaggttggcaggtctgcgTCGATGTTCCTTTTTTAACCACGTGATCGTGTGATGTCATCACTCAGCGTCCAGACAGGAACGCTCTGcattttatgtttatgaatatattttatatatattgaatatatatttatatatacatatgaagCACTCTGAGTAGTTTGTAGTTCGAATGTGGTGCTCTGTGTGTCGTCATCAGTCACTgaacataaatgttttaatgcttttagcaaataaacatttttaattaactttacaGCACTAAAACAGCACAGGAGTGGGAGGAGTCAGTggctgatgatgtcacatgaGTCAGGAAAATGTCCCTTTTTTGTTGATTAAAAATAACACCGCTACGCTTTTAACGTTTCTATTTAAATGGTGTTTCACCTGCACAGAAACATCAGCCACACTCGGgggtgtaaataaaatgtgctgttctgatcccactgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtaaacctggTTTTTAGTGAGTAAAATATGTGACTAAATAAATACTATCTGTTTCAGGTAAACTGAAATTCCCTCTCAGCATCCTTGACCCAATCAATCACTGACCCTTCTGTTCTGACCCCTGACCTTTAGCTCCGCCCCTAACAATCTAACCCTCCCACTCGTTAATGTAAAAcgttcatttcttttcattgtgGAATGAAATTCCAATATCCCCCCCTCTGTATGTTTAACTCTTTGACTCCTGACGCTGTTGAGATCAGATCGGATGAGATCAGATCAGAGCTCGTCGTGTTTCCTCGTCAGATCTTCTCCGTAATTAGTGGCTTGGCTGCCGACAAACATGTTCCAATTATCCAGAATCTCTGCCTTGGAAATTTTCTCGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU240501 False 2557 lncRNA 0.44 3 509919 512745
TU240503 True 2597 lncRNA 0.44 5 509919 512745

Neighbor

gene id symbol gene type direction distance location
nosip nosip,LOC107658495,LOC107729514,LOC107583007 coding upstream 2789 496444 ~ 507130 (+)
LOC113525007 LOC108280579,LOC108427364,LOC100007086,LOC107554108 coding upstream 14350 486254 ~ 495569 (+)
trpm4a LOC108280300 coding upstream 28485 457705 ~ 481434 (+)
scaf1 scaf1,LOC107658492,LOC107583012,LOC105925210 coding upstream 73025 423846 ~ 436894 (+)
LOC113525002 LOC108280599 coding upstream 88694 418751 ~ 421225 (+)
pax10 LOC108280587,LOC107557340,LOC106521360,LOC107579793 coding downstream 30655 543400 ~ 549365 (+)
LOC113524995 NA coding downstream 42544 555289 ~ 563409 (+)
bcl2l12 NA coding downstream 60649 573394 ~ 586456 (+)
srrm2 LOC108280305,LOC107583001,LOC107689653,LOC107729482,LOC107730748 coding downstream 140292 653037 ~ 666347 (+)
si:dkey-16l2.16 si:dkey-16l2.16,LOC108280555,LOC108427354,LOC107729502,LOC107554119,LOC107658507 coding downstream 177444 690189 ~ 705453 (+)
G203071 NA non-coding upstream 6022 445474 ~ 503897 (+)
G203108 NA non-coding upstream 202526 259191 ~ 307393 (+)
G203058 NA non-coding upstream 333928 175433 ~ 175991 (+)
G203049 NA non-coding upstream 350986 158552 ~ 158933 (+)
G203043 NA non-coding upstream 363202 144076 ~ 146717 (+)
G203135 NA non-coding downstream 844 513589 ~ 515888 (+)
G203141 NA non-coding downstream 18642 531387 ~ 531618 (+)
G203272 NA non-coding downstream 40976 553721 ~ 553946 (+)
G203277 NA non-coding downstream 73844 586589 ~ 586882 (+)
G203281 LOC108261056,LOC108428278 non-coding downstream 82433 595178 ~ 598723 (+)
LOC113525016 NA other upstream 142064 281212 ~ 367855 (+)
prl LOC108280547,LOC108427375,LOC103023606 other upstream 150565 266880 ~ 359354 (+)
G203077 NA other upstream 168643 199260 ~ 341276 (+)
G203081 NA other upstream 307114 201950 ~ 202805 (+)
G203047 NA other upstream 346783 156620 ~ 163136 (+)
LOC117598976 NA other downstream 10368 523113 ~ 529624 (+)
unc119.2 LOC108280499,LOC107689658,LOC107730769,LOC107658437,LOC108427309 other downstream 136699 649444 ~ 652250 (+)
thoc6 thoc6,LOC107580143,LOC108280484,LOC107730738,LOC107689651,LOC106600718 other downstream 154063 666808 ~ 723692 (+)
rnf25 rnf25 other downstream 194993 707738 ~ 717019 (+)
si:dkey-16l2.17 LOC108280473 other downstream 213984 726729 ~ 732890 (+)

Expression


Co-expression Network