G203169


Basic Information

Item Value
gene id G203169
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 157878 ~ 160160 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU240556
GTGAACGTACAGTCTATACTGCCAAACGTACGGCCTATACTGCCCATCGTACGATCTATACTGCTGAACGTAcagtctatactgccgaacgtacggtctatactgccgaacgtacggtctatactgccgaacgtacggtctatactgccgaacgtacggtctatactgccgaacgtacgatctatactgccgaacgtacgatctataATGCCCATCATACGATCTATACTGCTGAACGTAcagtctatactgccgaacgtacgatctatactgccgaacgtatgatctatactgccgaacgtacgatctatactgccC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU240556 True 318 lncRNA 0.48 2 157878 160160

Neighbor

gene id symbol gene type direction distance location
LOC113525295 NA coding downstream 18040 116874 ~ 139838 (-)
tnnt1 tnnt1,LOC108427325,LOC108280528,LOC107583024 coding downstream 78914 65197 ~ 78964 (-)
LOC113525292 LOC100528069,LOC108274011,LOC108280241,LOC108427383 coding downstream 138042 18347 ~ 19836 (-)
LOC113525293 LOC100528069,LOC108274011,LOC108280241,LOC108427383 coding downstream 138093 11118 ~ 19785 (-)
si:dkey-16p21.7 si:dkey-16p21.7,LOC108427376,LOC107658484,LOC107548343,LOC108274928,LOC108441159,LOC107598587,LOC107557374 coding upstream 43711 203871 ~ 250572 (-)
prmt1 prmt1,LOC107729532,LOC107658485,LOC107689671,LOC107730737 coding upstream 125881 286041 ~ 292612 (-)
si:ch211-195b15.7 LOC108280346 coding upstream 245766 405926 ~ 416575 (-)
rcn3 rcn3 coding upstream 347210 507370 ~ 516950 (-)
LOC113525013 NA coding upstream 451030 611190 ~ 614186 (-)
G203027 NA non-coding downstream 64742 91254 ~ 93136 (-)
G203016 NA non-coding downstream 105240 50132 ~ 52638 (-)
G203173 NA non-coding upstream 15358 175518 ~ 175992 (-)
G203164 NA non-coding upstream 18874 179034 ~ 179371 (-)
G203174 NA non-coding upstream 24780 184940 ~ 187021 (-)
LOC113525022 NA non-coding upstream 91910 252070 ~ 259480 (-)
G203152 NA non-coding upstream 137233 297393 ~ 371373 (-)
pih1d1 pih1d1 other downstream 54765 80628 ~ 103113 (-)
aldh16a1 aldh16a1 other downstream 103603 26642 ~ 54275 (-)
G203170 NA other upstream 1966 162126 ~ 162584 (-)
G203154 NA other upstream 171381 331541 ~ 333644 (-)
G203254 NA other upstream 326062 486222 ~ 489731 (-)
LOC117598978 NA other upstream 579508 739668 ~ 750458 (-)
G203488 NA other upstream 581084 741244 ~ 750799 (-)

Expression


Co-expression Network