G203173


Basic Information

Item Value
gene id G203173
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 175518 ~ 175992 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU240563
cacacaacacacaaacactacattacacaacacacaaacactacattacacaacacacaaacaccacattacacaacacacaaacactacattacacaacacacacaaacacattacacaacacacaaacactataacacacaaacaccacattacacaacacacaaacactacattacacaacacacaaacaccacattacacaacacacaaacactacattacacaacacacaaacaccacaacacacacaacacacaaacactacattacacaacacacaaacactacattacacaacacacaa
>TU240564
cacacaacacacaaacactacattacacaacacacaaacactacattacacaacacacaaacaccacattacacaacacacaaacactacattacacaacacacaaacaccacattacacaacacacaaacactacattacacaacacacaaacaccacattacacaacacacaaacactacattacacaacacacaaacaccacaacacacacaacacacaaacactacattacacaacacacaaacactacattacacaacacacaa
>TU240565
cacacaacacacaaacactacattacacaacacacaaacactacattacacaacacacaaacaccacattacacaacattacacaacacacaaacactacattacacaacacacaaacaccacattacacaacacacaaacactacattacacaacacacaaacaccacaacacacacaacacacaaacactacattacacaacacacaaacactacattacacaacacacaa
>TU240566
cacacaacacacaaacactacattacacaacacacaaacactacattacacaacacacaaacaccacattacacaacacacaaacactacattacacaacacacaaacaccacattacacaacacacaaacaccacacacacacaacacacaaacactacattacacaacacacaaactccacaacatacaacacacaaacactaca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU240563 True 307 lncRNA 0.37 2 175626 175992
TU240564 False 269 lncRNA 0.37 3 175626 175992
TU240565 False 233 lncRNA 0.37 3 175626 175992
TU240566 False 207 lncRNA 0.38 2 175518 175992

Neighbor

gene id symbol gene type direction distance location
LOC113525295 NA coding downstream 35680 116874 ~ 139838 (-)
tnnt1 tnnt1,LOC108427325,LOC108280528,LOC107583024 coding downstream 96554 65197 ~ 78964 (-)
LOC113525292 LOC100528069,LOC108274011,LOC108280241,LOC108427383 coding downstream 155682 18347 ~ 19836 (-)
LOC113525293 LOC100528069,LOC108274011,LOC108280241,LOC108427383 coding downstream 155733 11118 ~ 19785 (-)
si:dkey-16p21.7 si:dkey-16p21.7,LOC108427376,LOC107658484,LOC107548343,LOC108274928,LOC108441159,LOC107598587,LOC107557374 coding upstream 27879 203871 ~ 250572 (-)
prmt1 prmt1,LOC107729532,LOC107658485,LOC107689671,LOC107730737 coding upstream 110049 286041 ~ 292612 (-)
si:ch211-195b15.7 LOC108280346 coding upstream 229934 405926 ~ 416575 (-)
rcn3 rcn3 coding upstream 331378 507370 ~ 516950 (-)
LOC113525013 NA coding upstream 435198 611190 ~ 614186 (-)
G203169 NA non-coding downstream 15358 157878 ~ 160160 (-)
G203027 NA non-coding downstream 82382 91254 ~ 93136 (-)
G203016 NA non-coding downstream 122880 50132 ~ 52638 (-)
G203164 NA non-coding upstream 3042 179034 ~ 179371 (-)
G203174 NA non-coding upstream 8948 184940 ~ 187021 (-)
LOC113525022 NA non-coding upstream 76078 252070 ~ 259480 (-)
G203152 NA non-coding upstream 121401 297393 ~ 371373 (-)
G203158 NA non-coding upstream 126585 302577 ~ 341286 (-)
G203170 NA other downstream 12934 162126 ~ 162584 (-)
pih1d1 pih1d1 other downstream 72405 80628 ~ 103113 (-)
aldh16a1 aldh16a1 other downstream 121243 26642 ~ 54275 (-)
G203154 NA other upstream 155549 331541 ~ 333644 (-)
G203254 NA other upstream 310230 486222 ~ 489731 (-)
LOC117598978 NA other upstream 563676 739668 ~ 750458 (-)
G203488 NA other upstream 565252 741244 ~ 750799 (-)
LOC117598979 NA other upstream 574071 750063 ~ 753822 (-)

Expression


Co-expression Network