G203190


Basic Information

Item Value
gene id G203190
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 348585 ~ 371473 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU240583
cacacacacacacacacacaaacacacacacactcacacacacacacacacacacagaatggagagaggagagagtgtaTGAGTTTAGAAATGTTGTTCTTTGGGgatatttatgatttataaaatcacagtatTAAAATGATCAGTCGTGCCAGTACTGAGCGatacgataataataatattaatatcgtgataaaattatatcatgatacacttttctgagatatcaggATATTTTTACAAACCGTAtcgaagcagctgatttgatgttgaaaattttacagatttttttagaCACTTATGCaaaagatttattaaaacaGAGTCAAAAAAACCCCAGAACTAAATCAATATAAAGTAAAGATGAAACTAACCCGACAAAGCTGATGGTAAAGAAACTGAAACGGACGGAGAACGGAACGACGACGAGCGACAGCAATACGGAAACTGAGAAAAGCTCGACCAGTTGTTTTTTTAGCAGATGTATGTTCTGTGGTTATTACTGCAGAGCGTAAACACAGCATCAGAAACGTCACCGCTGTCACGTTTTTGTAAAATACGCTCCATAATCGTGTTGCAGAAACAGTTTATACGATTATTTACATCATGTCTCCTGAAATATCTAGATCTTAGAGAATCATGATGATATTTTTATCGTATCTGCTGAACCTGTCCTGAGTGTTAAGAAGGAAGCGTGCGCTTTAACGGACCTGCGGCGTGACGTACGGATATTCATCGGACGTCCACGAGCACACGTGTGGCTGTAAAGACCAgggctttgttttatttagtgcggatgatgaaatgaaaattcacacattttatgaTCTGAAAGTTCGGTTCCTGATCTTTGTTCCTCAGTGCCACAGCTTCAGATCCGTTTATAGCAGGATGATGATTTGATAAAATTATGTTTCGATAAGAATCTTGATAAGTTACAGGACAACGTGTGCTCCTGAGAAGGTTGCAGGTATCAGCAGTGCTTTATCATCACTGCATAAATAAACCTGCGCTGACCTCAGGACCGCTCGCTGGTTCTCCGCGACTAGAACACGCCTGcctgctgtaacacacctgaCTCATCAGCCGCTCGTTAACACGCCCGTCCTCACCTGGGCCGAGTTTCCTGAACGCCTCACCGCACAAACATCATCTTTTAACGctgttacaccacagtgctgctgaggTCTGCGTTCTGGATCGTGATTGGTTCAGAAGGtagatgttgattaattctctataacagcagctctgacagtagtgcagctttatttataattaatgcactcgttataactaacacgttatcgtttctatggtaacagttCACTCACAGACGGACGCTCCGCTGTCAGATTTTAAAactctttgatatggtgaatctTCTATAAGAAGAcgtttatttgcttatttatttatttatttatgtaacgtttatggaaggagtctccagtgtcagacgtaaagctgtaactaagttttgcgatgtcttcagcacagaggaacgtgatgtaacaagctgcatttttctgtcttattaacttcaagagagagagaaaaaaaagagagtttatagctgctataacgtaagcgaggacaggaactaactcgtttcaccgAAACTCCACAACATTATACGTAACTACAAACGGATAAAACGTAGGACGTGTTgtcatttaataaaacactttacacacacccTACGTGATGtaacaggaaactaatcaacttcagagtcgGAACAGTAACTTGTAGACTTGTAgcgttggttattttcctataacggcatgcCCCgctgtgtgttctctctctctctctctctctctctctctctctgttagaTTAGACACAGTGTTTTTGTGAAACAGATCTGAAAGTGTTGCAGAAGAATCACACCACTGTGGACCTCAGGACCAGGATTGTGAAGCCGTGACTCTGAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU240583 True 1940 lncRNA 0.40 2 348585 371473

Neighbor

gene id symbol gene type direction distance location
prmt1 prmt1,LOC107729532,LOC107658485,LOC107689671,LOC107730737 coding downstream 55973 286041 ~ 292612 (-)
si:dkey-16p21.7 si:dkey-16p21.7,LOC108427376,LOC107658484,LOC107548343,LOC108274928,LOC108441159,LOC107598587,LOC107557374 coding downstream 98013 203871 ~ 250572 (-)
cpt1cb NA coding downstream 148193 144168 ~ 200392 (-)
LOC113525295 NA coding downstream 208747 116874 ~ 139838 (-)
tnnt1 tnnt1,LOC108427325,LOC108280528,LOC107583024 coding downstream 269621 65197 ~ 78964 (-)
si:ch211-195b15.7 LOC108280346 coding upstream 34453 405926 ~ 416575 (-)
rcn3 rcn3 coding upstream 135897 507370 ~ 516950 (-)
LOC113525013 NA coding upstream 239717 611190 ~ 614186 (-)
tspan4b LOC108280533,LOC107729542,LOC107658498,LOC108427360 coding upstream 250872 622345 ~ 630711 (-)
si:ch73-248e21.7 NA coding upstream 264211 635684 ~ 639207 (-)
G203155 NA non-coding downstream 456 347525 ~ 348129 (-)
G203158 NA non-coding downstream 7299 302577 ~ 341286 (-)
G203156 NA non-coding downstream 13925 333701 ~ 334660 (-)
G203189 NA non-coding downstream 26397 321410 ~ 322188 (-)
G203167 NA non-coding downstream 39657 303191 ~ 308928 (-)
G203261 NA non-coding upstream 133843 505316 ~ 505912 (-)
G203268 NA non-coding upstream 161819 533292 ~ 533583 (-)
G203271 NA non-coding upstream 177990 549463 ~ 549711 (-)
LOC117598763 NA non-coding upstream 179931 551404 ~ 566798 (-)
G203425 NA non-coding upstream 294065 665538 ~ 669489 (-)
G203154 NA other downstream 14941 331541 ~ 333644 (-)
G203170 NA other downstream 186001 162126 ~ 162584 (-)
pih1d1 pih1d1 other downstream 245472 80628 ~ 103113 (-)
aldh16a1 aldh16a1 other downstream 294310 26642 ~ 54275 (-)
G203254 NA other upstream 114749 486222 ~ 489731 (-)
LOC117598978 NA other upstream 368195 739668 ~ 750458 (-)
G203488 NA other upstream 369771 741244 ~ 750799 (-)
LOC117598979 NA other upstream 378590 750063 ~ 753822 (-)
G203544 NA other upstream 538644 910117 ~ 911228 (-)

Expression


Co-expression Network