G203277


Basic Information

Item Value
gene id G203277
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 586589 ~ 586882 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU240727
tattctgtctgtgtttttttttttttccaacagaaCAGTGGATCTCTGTCAGTGCATCATGATTAAGTTCATTatatgatcatttatttatatttatataatatagttttaattgttgtaaattattttacacCATCAGTAGTTCAGTAAATGGCTCTGACTTTCACTAAACATAAAACTTAAACCAGAACAAGGActaaaaagtcatttaaaaagaagaattttgtaaatatattgtatataattacatGTCAAACAGGAAATATGTATTGAACAtagagatataaagtgaac

Function

GO: NA

KEGG:

id description
ko05320 Autoimmune thyroid disease
ko05330 Allograft rejection
ko05332 Graft-versus-host disease
ko04940 Type I diabetes mellitus

RNA

RNA id representative length rna type GC content exon number start site end site
TU240727 True 294 lncRNA 0.25 1 586589 586882

Neighbor

gene id symbol gene type direction distance location
bcl2l12 NA coding upstream 133 573394 ~ 586456 (+)
LOC113524995 NA coding upstream 23180 555289 ~ 563409 (+)
pax10 LOC108280587,LOC107557340,LOC106521360,LOC107579793 coding upstream 37224 543400 ~ 549365 (+)
nosip nosip,LOC107658495,LOC107729514,LOC107583007 coding upstream 79459 496444 ~ 507130 (+)
LOC113525007 LOC108280579,LOC108427364,LOC100007086,LOC107554108 coding upstream 91020 486254 ~ 495569 (+)
srrm2 LOC108280305,LOC107583001,LOC107689653,LOC107729482,LOC107730748 coding downstream 66155 653037 ~ 666347 (+)
si:dkey-16l2.16 si:dkey-16l2.16,LOC108280555,LOC108427354,LOC107729502,LOC107554119,LOC107658507 coding downstream 103307 690189 ~ 705453 (+)
kat8 kat8,LOC107658503,LOC107554120,LOC107582998 coding downstream 130735 717617 ~ 726285 (+)
hsd3b7 hsd3b7 coding downstream 225144 812026 ~ 849880 (+)
LOC113527857 itpripl2 coding downstream 278331 865213 ~ 882642 (+)
G203272 NA non-coding upstream 32643 553721 ~ 553946 (+)
G203141 NA non-coding upstream 54971 531387 ~ 531618 (+)
G203135 NA non-coding upstream 70701 513589 ~ 515888 (+)
G203134 NA non-coding upstream 73844 509919 ~ 512745 (+)
G203071 NA non-coding upstream 82692 445474 ~ 503897 (+)
G203281 LOC108261056,LOC108428278 non-coding downstream 8296 595178 ~ 598723 (+)
G203278 NA non-coding downstream 23822 610704 ~ 612555 (+)
G203296 NA non-coding downstream 36233 623115 ~ 624620 (+)
G203303 NA non-coding downstream 44408 631290 ~ 631582 (+)
G203328 NA non-coding downstream 92896 679778 ~ 686630 (+)
LOC117598976 NA other upstream 56965 523113 ~ 529624 (+)
LOC113525016 NA other upstream 218734 281212 ~ 367855 (+)
prl LOC108280547,LOC108427375,LOC103023606 other upstream 227235 266880 ~ 359354 (+)
G203077 NA other upstream 245313 199260 ~ 341276 (+)
unc119.2 LOC108280499,LOC107689658,LOC107730769,LOC107658437,LOC108427309 other downstream 62562 649444 ~ 652250 (+)
thoc6 thoc6,LOC107580143,LOC108280484,LOC107730738,LOC107689651,LOC106600718 other downstream 79926 666808 ~ 723692 (+)
rnf25 rnf25 other downstream 120856 707738 ~ 717019 (+)
si:dkey-16l2.17 LOC108280473 other downstream 139847 726729 ~ 732890 (+)
fus fus,LOC107658502,LOC107729526 other downstream 166185 753067 ~ 774250 (+)

Expression


Co-expression Network