rnf25 (rnf25)


Basic Information

Item Value
gene id rnf25
gene name rnf25
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 707738 ~ 717019 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU240792
CAGCCATCTGGGGGAAAGATGGCGGCCGAGAGCGATGTCCTGTGTGAGATTGAGGTTCTGCAGTCCATCTATCTGGATGAGCTGACGGTCACACAGAATGATGAAGGaggatgGAGAGTCAGTGTGATCCTTCACCCCTCCACTGGAGAAGACTGTCTGGCGCAGTTTGTCCGGCTCACGCTCACGCTGGACCTGGATTCAGAGTACCCGGCGTCTCCTCCCTGCATCTCCATCCACC
>XM_034310156.1
GTCGACAGTGTCCCGGGGCGCGTTCTGTGACGTCACCAGCCATCTGGGGGAAAGATGGCGGCCGAGAGCGATGTCCTGTGTGAGATTGAGGTTCTGCAGTCCATCTATCTGGATGAGCTGACGGTCACACAGAATGATGAAGGaggatgGAGAGTCAGTGTGATCCTTCACCCCTCCACTGGAGAAGACTGTCTGGCGCAGTTTGTCCGGCTCACGCTCACGCTGGACCTGGATTCAGAGTACCCGGCGTCTCCTCCCTGCATCTCCATCCACCCGGGTTCCTCCGCTCTcctccctgcTGTGGGTGTTGTGGGGGCACTTTCCGTGCTCTATCAGCTCatcgagAAAGCCAAAGAGATCCTGACCGAGAGCAACATTCCTCACGGCCACTGTGTGATCTGTCTGTACGGCTTTCAGGAGGGCGAGGTGTTCACTAAGACGAGCTGTTATCATTATTTCCACTCCCACTGCCTGGGCCGCTACGTCAGCACTTTCGGCGGGGAGGAGCTGCAGGAGGCGGTGAAGGGGAGCTGGAGGATAAAGACCAGGGCGGAGGACAGTCACGAACAGGGCGCTGGCTCTGGCTGTAACGCTTCGTTGCGCCGGTTAAACTCTCAGCCGGTCCTCTTACCGGGAACTGTGTCGGCGGCATGTCGATCTGGGGAGCAGCTGAGAGCCCCCGCTGACTCCTCAGACCCCGCCTCCGCCGACGCGCCAGACCCTGACTCCGCCCAACCGCCGCCTCATCCTCTCCCTCCTGAGGGCTCCAGTCAGAATCCTCGTCCTCCTCGTGCGGAGAACACGTTGTGCCCACCCCATCGCCGAGCTCCTCACGCTCCTCACGCCTCACGCCCTCATGCTCCTCACGCTCCTTACGGCAGGAGACAGCAGGTGGAGTTTAGAGGAGGCAGGAGAGACCGAGGAAAAGGAGGAGGTGGACGAGGAGGACATGTGGCTCATGCGGTTCCTCCGCCTGTGCTGGAGAACCTGGCCAAGCTCAGCGTGTCTGCAgcagaaagcagcaggaacGGCGGAGCGCCTCAGGACACCAGCGAACACGGAGACGGACATTTAGTCGAAGTAAAAGAGCCGCCGAGACAGGCTTTAGGAGACGAGAGCGCCGAAACGAGCCACCAGGAGACGCCGGAGTCGAAACTCGAACAGCATGTCACGTCAGATGGCGCTCAAACCGGAGCGAGGGAACGAGGAACGAGGCAGGAACGAGACAGGGGAAGGAGGCAGGGACCACGTGGACCACCGTACAGCCACCGGCACGAGAGAAACGCTCAGTGGGATAACGGCGTGAACgtccaccatcaccaccacagAGGAGCGAGAGGACACCGGGCGAGTCATCACCGAGGAAACGGGAAAAGCTGGCATCAGAGAACCGAGAGCGAGTTCAGGAAGGAAGGAGTTCTCTGACaatgggaggagggaggagCACACACACCGACCAGCTTCCCTCCCAGCTCGCTCACCTCTCTCACCTGTTACCTGCATCATCAACGCTGTAACACGATTCTGCACATCCACTGTAATAAAATTCTGCACCTGTGCTGTAGTGAA

Function

symbol description
rnf25 Predicted to enable ubiquitin protein ligase activity. Acts upstream of or within positive regulation of canonical Wnt signaling pathway. Predicted to be active in nucleus. Orthologous to human RNF25 (ring finger protein 25).

NR:

description
E3 ubiquitin-protein ligase RNF25-like isoform X1

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG:

id description
K10640 RNF25, AO7; E3 ubiquitin-protein ligase RNF25

RNA

RNA id representative length rna type GC content exon number start site end site
TU240792 False 238 TUCP 0.57 4 707774 710443
XM_034310156.1 True 1569 mRNA 0.60 9 707738 717019

Neighbor

gene id symbol gene type direction distance location
si:dkey-16l2.16 si:dkey-16l2.16,LOC108280555,LOC108427354,LOC107729502,LOC107554119,LOC107658507 coding upstream 2285 690189 ~ 705453 (+)
srrm2 LOC108280305,LOC107583001,LOC107689653,LOC107729482,LOC107730748 coding upstream 41391 653037 ~ 666347 (+)
bcl2l12 NA coding upstream 121282 573394 ~ 586456 (+)
LOC113524995 NA coding upstream 144329 555289 ~ 563409 (+)
pax10 LOC108280587,LOC107557340,LOC106521360,LOC107579793 coding upstream 158373 543400 ~ 549365 (+)
kat8 kat8,LOC107658503,LOC107554120,LOC107582998 coding downstream 598 717617 ~ 726285 (+)
hsd3b7 hsd3b7 coding downstream 95007 812026 ~ 849880 (+)
LOC113527857 itpripl2 coding downstream 148194 865213 ~ 882642 (+)
syt17 syt17,LOC107729446,LOC107658452,LOC107732856,LOC107564007 coding downstream 172242 889261 ~ 911910 (+)
smg1 smg1,LOC107729485 coding downstream 224001 941020 ~ 997685 (+)
G203328 NA non-coding upstream 21108 679778 ~ 686630 (+)
G203303 NA non-coding upstream 76156 631290 ~ 631582 (+)
G203296 NA non-coding upstream 83118 623115 ~ 624620 (+)
G203278 NA non-coding upstream 95183 610704 ~ 612555 (+)
G203281 LOC108261056,LOC108428278 non-coding upstream 109015 595178 ~ 598723 (+)
G203321 NA non-coding downstream 21320 738339 ~ 738727 (+)
G203339 NA non-coding downstream 24813 741832 ~ 743740 (+)
G203357 NA non-coding downstream 100372 817391 ~ 884366 (+)
G203327 NA non-coding downstream 341660 1058679 ~ 1060521 (+)
LOC117598762 NA non-coding downstream 344171 1061190 ~ 1078426 (+)
unc119.2 LOC108280499,LOC107689658,LOC107730769,LOC107658437,LOC108427309 other upstream 55488 649444 ~ 652250 (+)
LOC117598976 NA other upstream 178114 523113 ~ 529624 (+)
LOC113525016 NA other upstream 339883 281212 ~ 367855 (+)
prl LOC108280547,LOC108427375,LOC103023606 other upstream 348384 266880 ~ 359354 (+)
G203081 NA other upstream 504933 201950 ~ 202805 (+)
si:dkey-16l2.17 LOC108280473 other downstream 9710 726729 ~ 732890 (+)
fus fus,LOC107658502,LOC107729526 other downstream 36048 753067 ~ 774250 (+)
setd1a setd1a,LOC107737760,LOC107554121,LOC107729457 other downstream 61821 778840 ~ 806345 (+)
armc5 armc5 other downstream 317317 1034336 ~ 1056334 (+)
paqr4a paqr4,LOC101165805,LOC105897660,LOC104930707,LOC108280840,LOC107658445,LOC106606885,LOC102784286 other downstream 503475 1220494 ~ 1237202 (+)

Expression


Co-expression Network