G203339


Basic Information

Item Value
gene id G203339
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 741832 ~ 743740 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU240804
CTCGAGGAGTCTGCTGTTGACAACCTTCTGAGCAGCATCTCACTCACCACCTGAGTGGCTTTATTGAGAAGCTGATTAGACCTCAGAGGGACAGAACTGCTCACCTCACAGGTCTTTTTTACCTCGGAAACAATCCGCTGATCGGATTTACGCGGCTGCAAGAATGCAGACCGTCTGCGCCGAGAGGCTTTAGAAGAGCTGGACTTGGCCAGCAGCTCGTCACGCAGAAATAAATCTGCGTTCTTCGCAATAAGCTCCTCAGTGAAGCTGTCAATAACAGCCTGCAGGTTTGGAGCTTCGCTGATGGACACGAGGCTCTTAGCATcagtcactgctgctgctgctgcgttCTTCAGGCACGAGCACGACTGTCTGCTTTTATCTCTGACTCCAATAAGACTTCGGAGCTTCGCGAAAACGTCAGAGTTCTTTGGGTAGGAAGCTGAGCGAGCATCAGCATCACTCATCTGAGCTTCCGATCCATTTTCCATTATTCCGATCTCACTAGCAATTCCACTGATCACCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU240804 True 526 lncRNA 0.51 2 741832 743740

Neighbor

gene id symbol gene type direction distance location
kat8 kat8,LOC107658503,LOC107554120,LOC107582998 coding upstream 15547 717617 ~ 726285 (+)
si:dkey-16l2.16 si:dkey-16l2.16,LOC108280555,LOC108427354,LOC107729502,LOC107554119,LOC107658507 coding upstream 36379 690189 ~ 705453 (+)
srrm2 LOC108280305,LOC107583001,LOC107689653,LOC107729482,LOC107730748 coding upstream 75485 653037 ~ 666347 (+)
bcl2l12 NA coding upstream 155376 573394 ~ 586456 (+)
LOC113524995 NA coding upstream 178423 555289 ~ 563409 (+)
hsd3b7 hsd3b7 coding downstream 68286 812026 ~ 849880 (+)
LOC113527857 itpripl2 coding downstream 121473 865213 ~ 882642 (+)
syt17 syt17,LOC107729446,LOC107658452,LOC107732856,LOC107564007 coding downstream 145521 889261 ~ 911910 (+)
smg1 smg1,LOC107729485 coding downstream 197280 941020 ~ 997685 (+)
arl6ip1 arl6ip1,LOC107658451,LOC107674170,LOC107732869 coding downstream 256349 1000089 ~ 1014745 (+)
G203321 NA non-coding upstream 3105 738339 ~ 738727 (+)
G203328 NA non-coding upstream 55202 679778 ~ 686630 (+)
G203303 NA non-coding upstream 110250 631290 ~ 631582 (+)
G203296 NA non-coding upstream 117212 623115 ~ 624620 (+)
G203278 NA non-coding upstream 129277 610704 ~ 612555 (+)
G203357 NA non-coding downstream 73651 817391 ~ 884366 (+)
G203327 NA non-coding downstream 314939 1058679 ~ 1060521 (+)
LOC117598762 NA non-coding downstream 317450 1061190 ~ 1078426 (+)
G203385 NA non-coding downstream 366789 1110529 ~ 1110847 (+)
G203635 LOC108280870,LOC103034911 non-coding downstream 565657 1309397 ~ 1312989 (+)
si:dkey-16l2.17 LOC108280473 other upstream 8942 726729 ~ 732890 (+)
thoc6 thoc6,LOC107580143,LOC108280484,LOC107730738,LOC107689651,LOC106600718 other upstream 18140 666808 ~ 723692 (+)
rnf25 rnf25 other upstream 24813 707738 ~ 717019 (+)
unc119.2 LOC108280499,LOC107689658,LOC107730769,LOC107658437,LOC108427309 other upstream 89582 649444 ~ 652250 (+)
LOC117598976 NA other upstream 212208 523113 ~ 529624 (+)
fus fus,LOC107658502,LOC107729526 other downstream 9327 753067 ~ 774250 (+)
setd1a setd1a,LOC107737760,LOC107554121,LOC107729457 other downstream 35100 778840 ~ 806345 (+)
armc5 armc5 other downstream 290596 1034336 ~ 1056334 (+)
paqr4a paqr4,LOC101165805,LOC105897660,LOC104930707,LOC108280840,LOC107658445,LOC106606885,LOC102784286 other downstream 476754 1220494 ~ 1237202 (+)
kmt5c LOC108280634 other downstream 609589 1353329 ~ 1361460 (+)

Expression


Co-expression Network