G203357


Basic Information

Item Value
gene id G203357
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 817391 ~ 884366 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU240833
AATAAATAAGACTAGAAAGTGAGCATGCTGTATGGTATTGAAGTATGAATGTATGTACAGCacgtgtacagtacagtataaagCGTACATGTATATAAGTAACATGAGCGTGTAGGTAACATCTCTTTTTGACAGACAGGAAGGAAGCgatgaagaaaaactgtttcacacatttgaccttgctgtggcacacacacacacacacacacacacacactgttttattacttatctaatAAGCAATTATCTTTGAAAAGATAACCTGTACACGCTCTGAAGAGTTTAACCATAACATACATTTGTTTAGTGCATTAGTCAACAGCAGGGTCTGTTTGGACATTCTGTAAAAGGAAACTGTACAAATAGGCCTCACtttttacaacacacacacacacacacacacacacacatgcatacacacttcTGATCCCTAGAGATACACCTCTACGgcttgttgccatggagacgGGGATTTCACGCCGGGGTCACCAGGTGGGCGAGTCGCTCCGTCCCACTGTGACTCATGagcaatattctgatattatttCTTCCCcccattttttcctttctttcgcaATCATGACGGatgttttgagttttttttttctttctctgttttccaCCTCAAACACGCCTGCACTCACGTACAGTGAGGAATCACACTTTTCAGGACATCTGAGTCATATAACAAGCTgaatctctgtctctcccacacacacacacacacacacacacacacacacacacacacacatacacacacatacacacacacgttgctCAACTACTCGAGTGAagttttgtttcacttcactttacttaaAAGCAGAACAGAATCTGAAATAAGGAAAGGAGCTCAGCACAGTTTAGCATGAAACAAGTGACGATACAGATACGTCACGGCTTTATACATATCACACGCGTGTGAGCGAgcgagtgagggagggagggagggagggagagagagtgggggAGTGAAcaagtgagtgaaagagtgaatgagggagtgagtgagggaatgagtgagggaatgagtgagGGAATGAGGGAATGATTGAGGGAGTGattgagtgagagagtgaatgagggAGTGAGCAAAGGAGtgagtgagggaatgagtgagggaatgagtgagggaatgagggagtgattgagggagtgagtgagagtgaatgaggga

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU240833 True 1180 lncRNA 0.44 3 817391 884366

Neighbor

gene id symbol gene type direction distance location
kat8 kat8,LOC107658503,LOC107554120,LOC107582998 coding upstream 91106 717617 ~ 726285 (+)
si:dkey-16l2.16 si:dkey-16l2.16,LOC108280555,LOC108427354,LOC107729502,LOC107554119,LOC107658507 coding upstream 111938 690189 ~ 705453 (+)
srrm2 LOC108280305,LOC107583001,LOC107689653,LOC107729482,LOC107730748 coding upstream 151044 653037 ~ 666347 (+)
bcl2l12 NA coding upstream 230935 573394 ~ 586456 (+)
LOC113524995 NA coding upstream 253982 555289 ~ 563409 (+)
syt17 syt17,LOC107729446,LOC107658452,LOC107732856,LOC107564007 coding downstream 4895 889261 ~ 911910 (+)
smg1 smg1,LOC107729485 coding downstream 56654 941020 ~ 997685 (+)
arl6ip1 arl6ip1,LOC107658451,LOC107674170,LOC107732869 coding downstream 115723 1000089 ~ 1014745 (+)
elob tceb2,LOC108280902,LOC107564001,LOC103036770,LOC108427344,LOC105012960 coding downstream 137560 1021926 ~ 1034215 (+)
LOC113528077 NA coding downstream 152785 1037151 ~ 1042450 (+)
G203339 NA non-coding upstream 73651 741832 ~ 743740 (+)
G203321 NA non-coding upstream 78664 738339 ~ 738727 (+)
G203328 NA non-coding upstream 130761 679778 ~ 686630 (+)
G203303 NA non-coding upstream 185809 631290 ~ 631582 (+)
G203296 NA non-coding upstream 192771 623115 ~ 624620 (+)
G203327 NA non-coding downstream 174313 1058679 ~ 1060521 (+)
LOC117598762 NA non-coding downstream 176824 1061190 ~ 1078426 (+)
G203385 NA non-coding downstream 226163 1110529 ~ 1110847 (+)
G203635 LOC108280870,LOC103034911 non-coding downstream 425031 1309397 ~ 1312989 (+)
G203647 NA non-coding downstream 478017 1362383 ~ 1441015 (+)
setd1a setd1a,LOC107737760,LOC107554121,LOC107729457 other upstream 11046 778840 ~ 806345 (+)
fus fus,LOC107658502,LOC107729526 other upstream 43141 753067 ~ 774250 (+)
si:dkey-16l2.17 LOC108280473 other upstream 84501 726729 ~ 732890 (+)
thoc6 thoc6,LOC107580143,LOC108280484,LOC107730738,LOC107689651,LOC106600718 other upstream 93699 666808 ~ 723692 (+)
rnf25 rnf25 other upstream 100372 707738 ~ 717019 (+)
armc5 armc5 other downstream 149970 1034336 ~ 1056334 (+)
paqr4a paqr4,LOC101165805,LOC105897660,LOC104930707,LOC108280840,LOC107658445,LOC106606885,LOC102784286 other downstream 336128 1220494 ~ 1237202 (+)
kmt5c LOC108280634 other downstream 468963 1353329 ~ 1361460 (+)
syt3 syt3,LOC107551154,LOC107563990,LOC107680842 other downstream 677158 1561524 ~ 1619974 (+)
ccndx LOC108280826 other downstream 998686 1883052 ~ 1889515 (+)

Expression


Co-expression Network